Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUR entry

There are 6 chains in PDB entry 8VUR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 27	LYS 813
B	LEU 34	PHE 814
C	VAL 27	LYS 813
D	ASN 35	PHE 814
H	LEU 2	VAL 347
L	ASN 1	VAL 338

There are110 helices in PDB entry 8VUR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	53	Right-handed alpha
Helix 2	AA2	A	71	82	Right-handed alpha
Helix 3	AA3	A	83	86	Right-handed 310
Helix 4	AA4	A	103	114	Right-handed alpha
Helix 5	AA5	A	144	158	Right-handed alpha
Helix 6	AA6	A	170	186	Right-handed alpha
Helix 7	AA7	A	204	211	Right-handed alpha
Helix 8	AA8	A	224	237	Right-handed alpha
Helix 9	AA9	A	251	255	Right-handed 310
Helix 10	AB1	A	277	296	Right-handed alpha
Helix 11	AB2	A	317	327	Right-handed alpha
Helix 12	AB3	A	457	471	Right-handed alpha
Helix 13	AB4	A	499	507	Right-handed alpha
Helix 14	AB5	A	520	525	Right-handed alpha
Helix 15	AB6	A	559	580	Right-handed alpha
Helix 16	AB7	A	584	596	Right-handed alpha
Helix 17	AB8	A	607	638	Right-handed alpha
Helix 18	AB9	A	650	655	Right-handed alpha
Helix 19	AC1	A	668	677	Right-handed alpha
Helix 20	AC2	A	680	689	Right-handed alpha
Helix 21	AC3	A	694	704	Right-handed alpha
Helix 22	AC4	A	714	724	Right-handed alpha
Helix 23	AC5	A	749	764	Right-handed alpha
Helix 24	AC6	A	764	773	Right-handed alpha
Helix 25	AC7	A	782	797	Right-handed alpha
Helix 26	AC8	A	798	813	Right-handed alpha
Helix 27	AC9	B	48	54	Right-handed alpha
Helix 28	AD1	B	78	91	Right-handed alpha
Helix 29	AD2	B	108	120	Right-handed alpha
Helix 30	AD3	B	128	133	Right-handed 310
Helix 31	AD4	B	150	165	Right-handed alpha
Helix 32	AD5	B	179	192	Right-handed alpha
Helix 33	AD6	B	213	221	Right-handed alpha
Helix 34	AD7	B	232	245	Right-handed alpha
Helix 35	AD8	B	287	311	Right-handed alpha
Helix 36	AD9	B	334	338	Right-handed 310
Helix 37	AE1	B	459	472	Right-handed alpha
Helix 38	AE2	B	495	502	Right-handed alpha
Helix 39	AE3	B	515	522	Right-handed alpha
Helix 40	AE4	B	547	551	Right-handed 310
Helix 41	AE5	B	555	578	Right-handed alpha
Helix 42	AE6	B	580	594	Right-handed alpha
Helix 43	AE7	B	604	635	Right-handed alpha
Helix 44	AE8	B	648	652	Right-handed 310
Helix 45	AE9	B	669	678	Right-handed alpha
Helix 46	AF1	B	678	686	Right-handed alpha
Helix 47	AF2	B	693	703	Right-handed alpha
Helix 48	AF3	B	712	721	Right-handed alpha
Helix 49	AF4	B	751	766	Right-handed alpha
Helix 50	AF5	B	766	776	Right-handed alpha
Helix 51	AF6	B	790	814	Right-handed alpha
Helix 52	AF7	C	35	53	Right-handed alpha
Helix 53	AF8	C	70	83	Right-handed alpha
Helix 54	AF9	C	104	114	Right-handed alpha
Helix 55	AG1	C	125	130	Right-handed 310
Helix 56	AG2	C	143	157	Right-handed alpha
Helix 57	AG3	C	170	185	Right-handed alpha
Helix 58	AG4	C	186	188	Right-handed 310
Helix 59	AG5	C	204	211	Right-handed alpha
Helix 60	AG6	C	225	238	Right-handed alpha
Helix 61	AG7	C	250	255	Right-handed 310
Helix 62	AG8	C	256	261	Right-handed alpha
Helix 63	AG9	C	277	296	Right-handed alpha
Helix 64	AH1	C	317	327	Right-handed alpha
Helix 65	AH2	C	457	470	Right-handed alpha
Helix 66	AH3	C	499	506	Right-handed alpha
Helix 67	AH4	C	520	527	Right-handed alpha
Helix 68	AH5	C	559	566	Right-handed alpha
Helix 69	AH6	C	568	580	Right-handed alpha
Helix 70	AH7	C	584	595	Right-handed alpha
Helix 71	AH8	C	607	638	Right-handed alpha
Helix 72	AH9	C	650	655	Right-handed alpha
Helix 73	AI1	C	670	677	Right-handed alpha
Helix 74	AI2	C	677	683	Right-handed alpha
Helix 75	AI3	C	684	689	Right-handed alpha
Helix 76	AI4	C	696	704	Right-handed alpha
Helix 77	AI5	C	713	724	Right-handed alpha
Helix 78	AI6	C	749	763	Right-handed alpha
Helix 79	AI7	C	764	774	Right-handed alpha
Helix 80	AI8	C	781	813	Right-handed alpha
Helix 81	AI9	D	49	54	Right-handed alpha
Helix 82	AJ1	D	78	93	Right-handed alpha
Helix 83	AJ2	D	107	119	Right-handed alpha
Helix 84	AJ3	D	128	133	Right-handed 310
Helix 85	AJ4	D	150	165	Right-handed alpha
Helix 86	AJ5	D	179	193	Right-handed alpha
Helix 87	AJ6	D	212	221	Right-handed alpha
Helix 88	AJ7	D	233	247	Right-handed alpha
Helix 89	AJ8	D	287	311	Right-handed alpha
Helix 90	AJ9	D	334	338	Right-handed 310
Helix 91	AK1	D	443	447	Right-handed 310
Helix 92	AK2	D	459	472	Right-handed alpha
Helix 93	AK3	D	496	502	Right-handed alpha
Helix 94	AK4	D	516	522	Right-handed alpha
Helix 95	AK5	D	556	578	Right-handed alpha
Helix 96	AK6	D	580	594	Right-handed alpha
Helix 97	AK7	D	604	633	Right-handed alpha
Helix 98	AK8	D	647	652	Right-handed alpha
Helix 99	AK9	D	668	678	Right-handed alpha
Helix 100	AL1	D	680	685	Right-handed alpha
Helix 101	AL2	D	686	689	Right-handed 310
Helix 102	AL3	D	692	702	Right-handed alpha
Helix 103	AL4	D	712	721	Right-handed alpha
Helix 104	AL5	D	751	765	Right-handed alpha
Helix 105	AL6	D	766	776	Right-handed alpha
Helix 106	AL7	D	786	814	Right-handed alpha
Helix 107	AL8	H	64	66	Right-handed 310
Helix 108	AL9	H	87	91	Right-handed 310
Helix 109	AM1	L	82	86	Right-handed 310
Helix 110	AM2	L	311	315	Right-handed 310

There are 50 sheets in PDB entry 8VUR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	90	92	parallel
Strand 3	A	118	120	parallel
Strand 4	A	138	139	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	246	247	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	330	first strand
Strand 2	A	338	339	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	360	363	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	473	474	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	477	478	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	436	first strand
Strand 2	A	453	455	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	712	713	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	727	728	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	72	73	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	144	145	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	204	206	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	254	255	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	281	first strand
Strand 2	B	361	365	anti-parallel
Strand 3	B	377	378	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	474	475	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	478	479	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	419	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	434	437	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	536	first strand
Strand 2	B	708	711	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	64	65	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	119	120	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	193	197	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	267	268	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	351	356	anti-parallel
Strand 3	C	361	367	anti-parallel
Strand 4	C	372	374	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	346	347	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	477	478	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	437	first strand
Strand 2	C	452	455	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	543	first strand
Strand 2	C	727	729	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	144	145	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	254	255	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	351	first strand
Strand 2	D	355	356	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	478	479	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	419	first strand
Strand 2	D	456	458	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	439	first strand
Strand 2	D	451	453	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	489	first strand
Strand 2	D	492	494	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	708	711	first strand
Strand 2	D	533	538	anti-parallel
Strand 3	D	727	729	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	H	33	36	anti-parallel
Strand 3	H	97	100	anti-parallel
Strand 4	H	107	110	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	40	first strand
Strand 2	H	93	94	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	236	first strand
Strand 2	H	250	254	anti-parallel
Strand 3	H	307	312	anti-parallel
Strand 4	H	247	248	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	232	236	first strand
Strand 2	H	250	254	anti-parallel
Strand 3	H	307	312	anti-parallel
Strand 4	H	299	302	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	287	288	first strand
Strand 2	H	276	281	anti-parallel
Strand 3	H	265	269	anti-parallel
Strand 4	H	322	326	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	73	77	anti-parallel
Strand 4	L	64	67	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	107	108	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	34	39	anti-parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	233	234	first strand
Strand 2	L	246	253	anti-parallel
Strand 3	L	302	308	anti-parallel
Strand 4	L	292	296	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	238	240	first strand
Strand 2	L	334	337	parallel
Strand 3	L	317	323	anti-parallel
Strand 4	L	264	268	anti-parallel
Strand 5	L	275	278	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	238	240	first strand
Strand 2	L	334	337	parallel
Strand 3	L	317	323	anti-parallel
Strand 4	L	328	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUR