Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUS entry

There are 8 chains in PDB entry 8VUS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLN 1	LYS 211
F	GLU 1	GLU 215
H	GLN 1	LYS 211
L	GLU 1	GLU 215
A	ASP 23	CYS 779
B	LEU 34	LYS 784
C	ASP 23	CYS 779
D	ASN 35	LYS 784

There are 95 helices in PDB entry 8VUS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	28	32	Right-handed 310
Helix 2	AA2	E	61	65	Right-handed 310
Helix 3	AA3	F	126	129	Right-handed 310
Helix 4	AA4	F	185	190	Right-handed alpha
Helix 5	AA5	H	182	186	Right-handed 310
Helix 6	AA6	L	125	130	Right-handed alpha
Helix 7	AA7	L	185	190	Right-handed alpha
Helix 8	AA8	A	35	52	Right-handed alpha
Helix 9	AA9	A	71	83	Right-handed alpha
Helix 10	AB1	A	84	86	Right-handed 310
Helix 11	AB2	A	103	114	Right-handed alpha
Helix 12	AB3	A	125	129	Right-handed 310
Helix 13	AB4	A	144	146	Right-handed 310
Helix 14	AB5	A	147	158	Right-handed alpha
Helix 15	AB6	A	170	185	Right-handed alpha
Helix 16	AB7	A	186	188	Right-handed 310
Helix 17	AB8	A	204	213	Right-handed alpha
Helix 18	AB9	A	224	238	Right-handed alpha
Helix 19	AC1	A	250	261	Right-handed 310
Helix 20	AC2	A	277	296	Right-handed alpha
Helix 21	AC3	A	316	327	Right-handed alpha
Helix 22	AC4	A	458	471	Right-handed alpha
Helix 23	AC5	A	499	507	Right-handed alpha
Helix 24	AC6	A	520	525	Right-handed alpha
Helix 25	AC7	A	646	649	Right-handed 310
Helix 26	AC8	A	650	655	Right-handed alpha
Helix 27	AC9	A	668	677	Right-handed alpha
Helix 28	AD1	A	680	690	Right-handed alpha
Helix 29	AD2	A	694	704	Right-handed alpha
Helix 30	AD3	A	714	724	Right-handed alpha
Helix 31	AD4	A	749	764	Right-handed alpha
Helix 32	AD5	A	764	774	Right-handed alpha
Helix 33	AD6	B	48	54	Right-handed alpha
Helix 34	AD7	B	78	91	Right-handed alpha
Helix 35	AD8	B	108	120	Right-handed alpha
Helix 36	AD9	B	128	133	Right-handed 310
Helix 37	AE1	B	150	164	Right-handed alpha
Helix 38	AE2	B	179	193	Right-handed alpha
Helix 39	AE3	B	214	221	Right-handed alpha
Helix 40	AE4	B	232	245	Right-handed alpha
Helix 41	AE5	B	287	310	Right-handed alpha
Helix 42	AE6	B	335	339	Right-handed 310
Helix 43	AE7	B	459	472	Right-handed alpha
Helix 44	AE8	B	496	502	Right-handed alpha
Helix 45	AE9	B	515	522	Right-handed alpha
Helix 46	AF1	B	648	652	Right-handed 310
Helix 47	AF2	B	669	678	Right-handed alpha
Helix 48	AF3	B	678	686	Right-handed alpha
Helix 49	AF4	B	692	702	Right-handed alpha
Helix 50	AF5	B	712	721	Right-handed alpha
Helix 51	AF6	B	751	765	Right-handed alpha
Helix 52	AF7	B	766	776	Right-handed alpha
Helix 53	AF8	C	35	52	Right-handed alpha
Helix 54	AF9	C	70	86	Right-handed alpha
Helix 55	AG1	C	104	114	Right-handed alpha
Helix 56	AG2	C	143	157	Right-handed alpha
Helix 57	AG3	C	170	187	Right-handed alpha
Helix 58	AG4	C	204	213	Right-handed alpha
Helix 59	AG5	C	225	238	Right-handed alpha
Helix 60	AG6	C	251	260	Right-handed 310
Helix 61	AG7	C	277	296	Right-handed alpha
Helix 62	AG8	C	317	327	Right-handed alpha
Helix 63	AG9	C	458	470	Right-handed alpha
Helix 64	AH1	C	501	506	Right-handed alpha
Helix 65	AH2	C	520	527	Right-handed alpha
Helix 66	AH3	C	650	655	Right-handed alpha
Helix 67	AH4	C	670	677	Right-handed alpha
Helix 68	AH5	C	677	683	Right-handed alpha
Helix 69	AH6	C	683	689	Right-handed alpha
Helix 70	AH7	C	694	704	Right-handed alpha
Helix 71	AH8	C	713	724	Right-handed alpha
Helix 72	AH9	C	748	763	Right-handed alpha
Helix 73	AI1	C	764	774	Right-handed alpha
Helix 74	AI2	D	48	52	Right-handed 310
Helix 75	AI3	D	78	90	Right-handed alpha
Helix 76	AI4	D	107	119	Right-handed alpha
Helix 77	AI5	D	128	133	Right-handed 310
Helix 78	AI6	D	150	165	Right-handed alpha
Helix 79	AI7	D	179	193	Right-handed alpha
Helix 80	AI8	D	212	222	Right-handed alpha
Helix 81	AI9	D	233	245	Right-handed alpha
Helix 82	AJ1	D	287	311	Right-handed alpha
Helix 83	AJ2	D	334	338	Right-handed 310
Helix 84	AJ3	D	413	415	Right-handed 310
Helix 85	AJ4	D	443	447	Right-handed 310
Helix 86	AJ5	D	460	472	Right-handed alpha
Helix 87	AJ6	D	496	501	Right-handed alpha
Helix 88	AJ7	D	515	522	Right-handed alpha
Helix 89	AJ8	D	668	678	Right-handed alpha
Helix 90	AJ9	D	680	685	Right-handed alpha
Helix 91	AK1	D	686	689	Right-handed 310
Helix 92	AK2	D	693	702	Right-handed alpha
Helix 93	AK3	D	712	721	Right-handed alpha
Helix 94	AK4	D	751	765	Right-handed alpha
Helix 95	AK5	D	767	776	Right-handed alpha

There are 53 sheets in PDB entry 8VUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	109	113	parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	80	82	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	126	first strand
Strand 2	E	136	142	anti-parallel
Strand 3	E	173	178	anti-parallel
Strand 4	E	161	162	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	126	first strand
Strand 2	E	136	142	anti-parallel
Strand 3	E	173	178	anti-parallel
Strand 4	E	166	167	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	151	first strand
Strand 2	E	192	197	anti-parallel
Strand 3	E	202	207	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	22	25	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	48	49	anti-parallel
Strand 3	F	34	38	anti-parallel
Strand 4	F	85	89	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	72	73	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	120	first strand
Strand 2	F	131	141	anti-parallel
Strand 3	F	175	184	anti-parallel
Strand 4	F	161	165	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	152	first strand
Strand 2	F	193	200	anti-parallel
Strand 3	F	207	212	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	110	113	parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	70	first strand
Strand 2	H	81	83	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	125	first strand
Strand 2	H	134	142	anti-parallel
Strand 3	H	173	180	anti-parallel
Strand 4	H	166	167	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	151	first strand
Strand 2	H	191	197	anti-parallel
Strand 3	H	202	208	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	21	24	anti-parallel
Strand 3	L	71	73	anti-parallel
Strand 4	L	64	65	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	131	137	anti-parallel
Strand 3	L	178	184	anti-parallel
Strand 4	L	161	164	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	152	first strand
Strand 2	L	193	199	anti-parallel
Strand 3	L	211	212	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	57	58	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	118	119	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	351	355	anti-parallel
Strand 3	A	362	367	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	477	478	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	413	first strand
Strand 2	A	453	455	anti-parallel
Strand 3	A	434	436	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	713	first strand
Strand 2	A	536	543	anti-parallel
Strand 3	A	727	728	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	713	first strand
Strand 2	A	536	543	anti-parallel
Strand 3	A	734	737	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	68	69	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	98	100	parallel
Strand 3	B	124	126	parallel
Strand 4	B	144	145	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	204	205	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	254	255	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	281	first strand
Strand 2	B	361	365	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	474	475	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	478	479	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	B	434	435	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	489	first strand
Strand 2	B	492	495	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	741	742	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	524	first strand
Strand 2	B	744	745	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	536	first strand
Strand 2	B	708	711	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	118	120	parallel
Strand 3	C	137	139	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	164	168	parallel
Strand 3	C	219	222	parallel
Strand 4	C	248	249	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	351	355	anti-parallel
Strand 3	C	362	363	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	373	374	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	477	478	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	413	first strand
Strand 2	C	452	457	anti-parallel
Strand 3	C	434	437	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	737	740	anti-parallel
Strand 3	C	535	536	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	71	73	parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	254	255	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	281	first strand
Strand 2	D	361	364	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	343	first strand
Strand 2	D	346	347	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	478	479	parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	420	first strand
Strand 2	D	451	458	anti-parallel
Strand 3	D	434	439	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	708	711	first strand
Strand 2	D	533	537	anti-parallel
Strand 3	D	728	729	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUS