Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUU entry

There are 3 chains in PDB entry 8VUU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	ALA 841
B	SER 31	GLN 845
C	ASP 23	ALA 62

There are109 helices in PDB entry 8VUU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	54	Right-handed alpha
Helix 2	AA2	A	71	86	Right-handed alpha
Helix 3	AA3	A	106	111	Right-handed alpha
Helix 4	AA4	A	112	114	Right-handed 310
Helix 5	AA5	A	144	146	Right-handed 310
Helix 6	AA6	A	147	159	Right-handed alpha
Helix 7	AA7	A	175	187	Right-handed alpha
Helix 8	AA8	A	205	213	Right-handed alpha
Helix 9	AA9	A	226	238	Right-handed alpha
Helix 10	AB1	A	255	260	Right-handed 310
Helix 11	AB2	A	276	296	Right-handed alpha
Helix 12	AB3	A	317	327	Right-handed alpha
Helix 13	AB4	A	458	471	Right-handed alpha
Helix 14	AB5	A	499	507	Right-handed alpha
Helix 15	AB6	A	522	526	Right-handed 310
Helix 16	AB7	A	561	579	Right-handed alpha
Helix 17	AB8	A	603	616	Right-handed alpha
Helix 18	AB9	A	628	657	Right-handed alpha
Helix 19	AC1	A	665	668	Right-handed 310
Helix 20	AC2	A	669	674	Right-handed alpha
Helix 21	AC3	A	687	695	Right-handed alpha
Helix 22	AC4	A	699	709	Right-handed alpha
Helix 23	AC5	A	715	723	Right-handed alpha
Helix 24	AC6	A	733	743	Right-handed alpha
Helix 25	AC7	A	769	782	Right-handed alpha
Helix 26	AC8	A	783	792	Right-handed alpha
Helix 27	AC9	A	812	841	Right-handed alpha
Helix 28	AD1	B	46	53	Right-handed alpha
Helix 29	AD2	B	77	92	Right-handed alpha
Helix 30	AD3	B	106	120	Right-handed alpha
Helix 31	AD4	B	127	131	Right-handed 310
Helix 32	AD5	B	150	164	Right-handed alpha
Helix 33	AD6	B	178	193	Right-handed alpha
Helix 34	AD7	B	212	221	Right-handed alpha
Helix 35	AD8	B	233	247	Right-handed alpha
Helix 36	AD9	B	259	264	Right-handed alpha
Helix 37	AE1	B	288	310	Right-handed alpha
Helix 38	AE2	B	332	340	Right-handed alpha
Helix 39	AE3	B	460	473	Right-handed alpha
Helix 40	AE4	B	496	503	Right-handed alpha
Helix 41	AE5	B	548	552	Right-handed 310
Helix 42	AE6	B	557	579	Right-handed alpha
Helix 43	AE7	B	605	614	Right-handed alpha
Helix 44	AE8	B	625	656	Right-handed alpha
Helix 45	AE9	B	689	698	Right-handed alpha
Helix 46	AF1	B	713	723	Right-handed alpha
Helix 47	AF2	B	733	742	Right-handed alpha
Helix 48	AF3	B	772	787	Right-handed alpha
Helix 49	AF4	B	787	797	Right-handed alpha
Helix 50	AF5	B	819	843	Right-handed alpha
Helix 51	AF6	C	36	53	Right-handed alpha
Helix 52	AF7	C	70	86	Right-handed alpha
Helix 53	AF8	C	105	110	Right-handed alpha
Helix 54	AF9	C	143	157	Right-handed alpha
Helix 55	AG1	C	170	185	Right-handed alpha
Helix 56	AG2	C	186	188	Right-handed 310
Helix 57	AG3	C	205	213	Right-handed alpha
Helix 58	AG4	C	224	238	Right-handed alpha
Helix 59	AG5	C	251	255	Right-handed 310
Helix 60	AG6	C	257	262	Right-handed alpha
Helix 61	AG7	C	276	296	Right-handed alpha
Helix 62	AG8	C	317	326	Right-handed alpha
Helix 63	AG9	C	458	468	Right-handed alpha
Helix 64	AH1	C	499	508	Right-handed alpha
Helix 65	AH2	C	520	527	Right-handed alpha
Helix 66	AH3	C	561	584	Right-handed alpha
Helix 67	AH4	C	603	615	Right-handed alpha
Helix 68	AH5	C	626	657	Right-handed alpha
Helix 69	AH6	C	669	674	Right-handed alpha
Helix 70	AH7	C	687	696	Right-handed alpha
Helix 71	AH8	C	699	709	Right-handed alpha
Helix 72	AH9	C	715	723	Right-handed alpha
Helix 73	AI1	C	733	740	Right-handed alpha
Helix 74	AI2	C	768	780	Right-handed alpha
Helix 75	AI3	C	783	793	Right-handed alpha
Helix 76	AI4	C	809	812	Right-handed 310
Helix 77	AI5	C	813	841	Right-handed alpha
Helix 78	AI6	D	46	55	Right-handed alpha
Helix 79	AI7	D	77	92	Right-handed alpha
Helix 80	AI8	D	106	119	Right-handed alpha
Helix 81	AI9	D	127	132	Right-handed 310
Helix 82	AJ1	D	149	164	Right-handed alpha
Helix 83	AJ2	D	178	193	Right-handed alpha
Helix 84	AJ3	D	212	223	Right-handed alpha
Helix 85	AJ4	D	233	248	Right-handed alpha
Helix 86	AJ5	D	259	264	Right-handed alpha
Helix 87	AJ6	D	288	311	Right-handed alpha
Helix 88	AJ7	D	323	329	Right-handed 310
Helix 89	AJ8	D	333	340	Right-handed alpha
Helix 90	AJ9	D	460	473	Right-handed alpha
Helix 91	AK1	D	495	503	Right-handed alpha
Helix 92	AK2	D	555	579	Right-handed alpha
Helix 93	AK3	D	602	614	Right-handed alpha
Helix 94	AK4	D	626	654	Right-handed alpha
Helix 95	AK5	D	668	672	Right-handed 310
Helix 96	AK6	D	689	699	Right-handed alpha
Helix 97	AK7	D	712	724	Right-handed alpha
Helix 98	AK8	D	733	742	Right-handed alpha
Helix 99	AK9	D	772	786	Right-handed alpha
Helix 100	AL1	D	787	797	Right-handed alpha
Helix 101	AL2	D	818	845	Right-handed alpha
Helix 102	AL3	H	28	32	Right-handed 310
Helix 103	AL4	H	153	155	Right-handed 310
Helix 104	AL5	H	184	186	Right-handed 310
Helix 105	AL6	J	153	155	Right-handed 310
Helix 106	AL7	J	184	186	Right-handed 310
Helix 107	AL8	K	185	190	Right-handed alpha
Helix 108	AL9	L	125	129	Right-handed 310
Helix 109	AM1	L	185	190	Right-handed alpha

There are 49 sheets in PDB entry 8VUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	64	first strand
Strand 2	A	25	31	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	219	220	parallel
Strand 3	A	247	248	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	360	363	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	372	373	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	453	457	anti-parallel
Strand 3	A	434	436	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	732	first strand
Strand 2	A	538	543	anti-parallel
Strand 3	A	746	748	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	97	99	parallel
Strand 3	B	123	125	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	168	172	parallel
Strand 3	B	227	229	parallel
Strand 4	B	255	258	parallel
Strand 5	B	277	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	379	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	409	first strand
Strand 2	B	475	479	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	420	first strand
Strand 2	B	454	459	anti-parallel
Strand 3	B	434	437	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	525	first strand
Strand 2	B	765	767	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	536	first strand
Strand 2	B	730	732	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	748	749	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	65	first strand
Strand 2	C	25	32	parallel
Strand 3	C	90	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	138	139	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	219	222	parallel
Strand 3	C	247	248	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	352	357	anti-parallel
Strand 3	C	360	367	anti-parallel
Strand 4	C	372	373	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	477	478	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	413	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	434	439	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	753	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	97	100	parallel
Strand 3	D	123	125	parallel
Strand 4	D	143	145	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	172	first strand
Strand 2	D	198	203	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	278	282	parallel
Strand 3	D	362	367	anti-parallel
Strand 4	D	373	380	anti-parallel
Strand 5	D	383	384	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	475	476	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	479	480	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	420	first strand
Strand 2	D	453	459	anti-parallel
Strand 3	D	435	438	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	525	first strand
Strand 2	D	765	766	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	531	first strand
Strand 2	D	761	762	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	536	first strand
Strand 2	D	729	731	anti-parallel
Strand 3	D	684	685	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	93	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	78	83	anti-parallel
Strand 3	H	68	72	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	132	142	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	161	162	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	132	142	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	166	167	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	151	first strand
Strand 2	H	191	197	anti-parallel
Strand 3	H	202	208	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	J	21	24	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	71	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	109	113	parallel
Strand 3	J	92	95	anti-parallel
Strand 4	J	37	39	anti-parallel
Strand 5	J	46	47	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	51	first strand
Strand 2	J	58	60	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	126	first strand
Strand 2	J	132	142	anti-parallel
Strand 3	J	173	182	anti-parallel
Strand 4	J	161	162	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	126	first strand
Strand 2	J	132	142	anti-parallel
Strand 3	J	173	182	anti-parallel
Strand 4	J	166	167	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	147	151	first strand
Strand 2	J	191	197	anti-parallel
Strand 3	J	202	208	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	64	65	first strand
Strand 2	K	72	73	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	89	90	first strand
Strand 2	K	99	100	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	116	120	first strand
Strand 2	K	131	141	anti-parallel
Strand 3	K	175	184	anti-parallel
Strand 4	K	161	165	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	147	152	first strand
Strand 2	K	193	199	anti-parallel
Strand 3	K	207	212	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	105	108	parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	49	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	65	first strand
Strand 2	L	72	75	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	152	first strand
Strand 2	L	193	199	anti-parallel
Strand 3	L	207	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUU