Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUV entry

There are 4 chains in PDB entry 8VUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	GLN 393
H	GLN 1	LYS 211
L	GLU 1	GLU 215
B	SER 31	LYS 387

There are 24 helices in PDB entry 8VUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	54	Right-handed alpha
Helix 2	AA2	A	72	86	Right-handed alpha
Helix 3	AA3	A	104	114	Right-handed alpha
Helix 4	AA4	A	147	159	Right-handed alpha
Helix 5	AA5	A	170	186	Right-handed alpha
Helix 6	AA6	A	205	213	Right-handed alpha
Helix 7	AA7	A	224	238	Right-handed alpha
Helix 8	AA8	A	276	296	Right-handed alpha
Helix 9	AA9	A	317	326	Right-handed alpha
Helix 10	AB1	H	184	186	Right-handed 310
Helix 11	AB2	L	125	129	Right-handed 310
Helix 12	AB3	L	185	190	Right-handed alpha
Helix 13	AB4	B	46	55	Right-handed alpha
Helix 14	AB5	B	77	92	Right-handed alpha
Helix 15	AB6	B	107	119	Right-handed alpha
Helix 16	AB7	B	127	132	Right-handed 310
Helix 17	AB8	B	149	164	Right-handed alpha
Helix 18	AB9	B	178	190	Right-handed alpha
Helix 19	AC1	B	212	223	Right-handed alpha
Helix 20	AC2	B	233	248	Right-handed alpha
Helix 21	AC3	B	259	264	Right-handed alpha
Helix 22	AC4	B	288	312	Right-handed alpha
Helix 23	AC5	B	326	330	Right-handed 310
Helix 24	AC6	B	332	339	Right-handed alpha

There are 19 sheets in PDB entry 8VUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	29	31	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	164	167	parallel
Strand 3	A	219	222	parallel
Strand 4	A	247	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	372	373	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	22	25	anti-parallel
Strand 3	H	78	79	anti-parallel
Strand 4	H	72	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	93	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	132	142	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	160	162	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	132	142	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	166	167	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	151	first strand
Strand 2	H	191	197	anti-parallel
Strand 3	H	202	208	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	72	75	anti-parallel
Strand 4	L	64	65	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	105	108	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	46	first strand
Strand 2	L	34	38	anti-parallel
Strand 3	L	85	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	135	141	anti-parallel
Strand 3	L	175	181	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	131	132	first strand
Strand 2	L	183	184	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	152	first strand
Strand 2	L	193	199	anti-parallel
Strand 3	L	207	212	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	37	41	parallel
Strand 3	B	96	99	parallel
Strand 4	B	123	125	parallel
Strand 5	B	143	145	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	169	171	parallel
Strand 3	B	228	229	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	278	282	parallel
Strand 3	B	362	367	anti-parallel
Strand 4	B	373	379	anti-parallel
Strand 5	B	384	386	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	347	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUV