Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUW entry

There are 5 chains in PDB entry 8VUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 11	THR 321
B	PRO 11	THR 321
C	PRO 11	THR 321
D	PRO 11	THR 321
E	PRO 11	THR 321

There are 55 helices in PDB entry 8VUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	70	Right-handed alpha
Helix 2	AA2	A	176	179	Right-handed 310
Helix 3	AA3	A	201	208	Right-handed alpha
Helix 4	AA4	A	208	222	Right-handed alpha
Helix 5	AA5	A	223	225	Right-handed 310
Helix 6	AA6	A	227	232	Right-handed alpha
Helix 7	AA7	A	232	244	Right-handed alpha
Helix 8	AA8	A	247	253	Right-handed alpha
Helix 9	AA9	A	260	287	Right-handed alpha
Helix 10	AB1	A	296	300	Right-handed 310
Helix 11	AB2	A	302	321	Right-handed alpha
Helix 12	AB3	B	62	70	Right-handed alpha
Helix 13	AB4	B	176	179	Right-handed 310
Helix 14	AB5	B	201	208	Right-handed alpha
Helix 15	AB6	B	208	222	Right-handed alpha
Helix 16	AB7	B	223	225	Right-handed 310
Helix 17	AB8	B	227	232	Right-handed alpha
Helix 18	AB9	B	232	244	Right-handed alpha
Helix 19	AC1	B	247	253	Right-handed alpha
Helix 20	AC2	B	260	287	Right-handed alpha
Helix 21	AC3	B	296	300	Right-handed 310
Helix 22	AC4	B	302	321	Right-handed alpha
Helix 23	AC5	C	62	70	Right-handed alpha
Helix 24	AC6	C	176	179	Right-handed 310
Helix 25	AC7	C	201	208	Right-handed alpha
Helix 26	AC8	C	208	222	Right-handed alpha
Helix 27	AC9	C	223	225	Right-handed 310
Helix 28	AD1	C	227	232	Right-handed alpha
Helix 29	AD2	C	232	244	Right-handed alpha
Helix 30	AD3	C	247	253	Right-handed alpha
Helix 31	AD4	C	260	287	Right-handed alpha
Helix 32	AD5	C	296	300	Right-handed 310
Helix 33	AD6	C	302	321	Right-handed alpha
Helix 34	AD7	D	62	70	Right-handed alpha
Helix 35	AD8	D	176	179	Right-handed 310
Helix 36	AD9	D	201	208	Right-handed alpha
Helix 37	AE1	D	208	222	Right-handed alpha
Helix 38	AE2	D	223	225	Right-handed 310
Helix 39	AE3	D	227	232	Right-handed alpha
Helix 40	AE4	D	232	244	Right-handed alpha
Helix 41	AE5	D	247	253	Right-handed alpha
Helix 42	AE6	D	260	287	Right-handed alpha
Helix 43	AE7	D	296	300	Right-handed 310
Helix 44	AE8	D	302	321	Right-handed alpha
Helix 45	AE9	E	62	70	Right-handed alpha
Helix 46	AF1	E	176	179	Right-handed 310
Helix 47	AF2	E	201	208	Right-handed alpha
Helix 48	AF3	E	208	222	Right-handed alpha
Helix 49	AF4	E	223	225	Right-handed 310
Helix 50	AF5	E	227	232	Right-handed alpha
Helix 51	AF6	E	232	244	Right-handed alpha
Helix 52	AF7	E	247	253	Right-handed alpha
Helix 53	AF8	E	260	287	Right-handed alpha
Helix 54	AF9	E	296	300	Right-handed 310
Helix 55	AG1	E	302	321	Right-handed alpha

There are 15 sheets in PDB entry 8VUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	81	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	148	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	167	174	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	81	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	148	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	167	174	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	81	94	anti-parallel
Strand 3	C	99	111	anti-parallel
Strand 4	C	32	44	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	148	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	174	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	58	first strand
Strand 2	D	81	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	148	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	160	162	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	167	174	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	81	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	148	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	187	199	anti-parallel
Strand 4	E	167	174	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUW