Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VUX entry

There are 2 chains in PDB entry 8VUX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 1254
B
 MET 1MET 1254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 8VUX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 8Right-handed alpha
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
30 58Right-handed alpha
Helix 4
AA4
A
68 99Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
108 130Right-handed alpha
Helix 7
AA7
A
137 161Right-handed alpha
Helix 8
AA8
A
170 189Right-handed alpha
Helix 9
AA9
A
214 219Right-handed alpha
Helix 10
AB1
A
223 234Right-handed alpha
Helix 11
AB2
A
237 241Right-handed 310
Helix 12
AB3
A
249 268Right-handed alpha
Helix 13
AB4
A
312 321Right-handed alpha
Helix 14
AB5
A
325 329Right-handed 310
Helix 15
AB6
A
331 355Right-handed alpha
Helix 16
AB7
A
361 408Right-handed alpha
Helix 17
AB8
A
423 434Right-handed alpha
Helix 18
AB9
A
435 441Right-handed alpha
Helix 19
AC1
A
442 462Right-handed alpha
Helix 20
AC2
A
463 477Right-handed alpha
Helix 21
AC3
A
547 572Right-handed alpha
Helix 22
AC4
A
579 599Right-handed alpha
Helix 23
AC5
A
601 621Right-handed alpha
Helix 24
AC6
A
683 692Right-handed alpha
Helix 25
AC7
A
721 728Right-handed alpha
Helix 26
AC8
A
735 744Right-handed alpha
Helix 27
AC9
A
746 752Right-handed alpha
Helix 28
AD1
A
755 759Right-handed 310
Helix 29
AD2
A
769 784Right-handed alpha
Helix 30
AD3
A
799 810Right-handed alpha
Helix 31
AD4
A
852 859Right-handed alpha
Helix 32
AD5
A
860 869Right-handed alpha
Helix 33
AD6
A
974 1000Right-handed alpha
Helix 34
AD7
A
1012 1044Right-handed alpha
Helix 35
AD8
A
1088 1110Right-handed alpha
Helix 36
AD9
A
1112 1118Right-handed 310
Helix 37
AE1
A
1119 1147Right-handed alpha
Helix 38
AE2
A
1148 1161Right-handed alpha
Helix 39
AE3
A
1161 1168Right-handed alpha
Helix 40
AE4
A
1172 1221Right-handed alpha
Helix 41
AE5
A
1222 1225Right-handed 310
Helix 42
AE6
A
1226 1251Right-handed alpha
Helix 43
AE7
B
2 8Right-handed alpha
Helix 44
AE8
B
17 22Right-handed alpha
Helix 45
AE9
B
30 58Right-handed alpha
Helix 46
AF1
B
68 98Right-handed alpha
Helix 47
AF2
B
104 130Right-handed alpha
Helix 48
AF3
B
137 161Right-handed alpha
Helix 49
AF4
B
172 189Right-handed alpha
Helix 50
AF5
B
208 212Right-handed 310
Helix 51
AF6
B
214 221Right-handed alpha
Helix 52
AF7
B
224 234Right-handed alpha
Helix 53
AF8
B
237 241Right-handed 310
Helix 54
AF9
B
249 268Right-handed alpha
Helix 55
AG1
B
313 321Right-handed alpha
Helix 56
AG2
B
325 328Right-handed 310
Helix 57
AG3
B
329 354Right-handed alpha
Helix 58
AG4
B
359 406Right-handed alpha
Helix 59
AG5
B
418 423Right-handed alpha
Helix 60
AG6
B
423 433Right-handed alpha
Helix 61
AG7
B
435 442Right-handed alpha
Helix 62
AG8
B
442 463Right-handed alpha
Helix 63
AG9
B
465 477Right-handed alpha
Helix 64
AH1
B
547 572Right-handed alpha
Helix 65
AH2
B
578 621Right-handed alpha
Helix 66
AH3
B
683 692Right-handed alpha
Helix 67
AH4
B
721 728Right-handed alpha
Helix 68
AH5
B
733 743Right-handed alpha
Helix 69
AH6
B
746 753Right-handed alpha
Helix 70
AH7
B
769 784Right-handed alpha
Helix 71
AH8
B
799 810Right-handed alpha
Helix 72
AH9
B
815 820Right-handed 310
Helix 73
AI1
B
851 859Right-handed alpha
Helix 74
AI2
B
860 870Right-handed alpha
Helix 75
AI3
B
974 1000Right-handed alpha
Helix 76
AI4
B
1012 1044Right-handed alpha
Helix 77
AI5
B
1088 1112Right-handed alpha
Helix 78
AI6
B
1113 1117Right-handed 310
Helix 79
AI7
B
1118 1138Right-handed alpha
Helix 80
AI8
B
1138 1147Right-handed alpha
Helix 81
AI9
B
1148 1161Right-handed alpha
Helix 82
AJ1
B
1161 1168Right-handed alpha
Helix 83
AJ2
B
1172 1221Right-handed alpha
Helix 84
AJ3
B
1226 1251Right-handed alpha
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There are 6 sheets in PDB entry 8VUX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
664 669first strand
Strand 2
A
642 649anti-parallel
Strand 3
A
701 704anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 652first strand
Strand 2
A
696 697anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 709first strand
Strand 2
A
788 792parallel
Strand 3
A
822 826parallel
Strand 4
A
673 677parallel
Strand 5
A
837 842parallel
Strand 6
A
845 851anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
667 669first strand
Strand 2
B
642 652anti-parallel
Strand 3
B
696 704anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
791 792first strand
Strand 2
B
823 825parallel
Strand 3
B
674 677parallel
Strand 4
B
837 842parallel
Strand 5
B
845 846anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
708 709first strand
Strand 2
B
788 789parallel
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