Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VUY entry

There are 3 chains in PDB entry 8VUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	ALA 841
B	SER 34	GLN 845
C	LYS 25	ALA 62

There are108 helices in PDB entry 8VUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	51	Right-handed alpha
Helix 2	AA2	A	70	85	Right-handed alpha
Helix 3	AA3	A	104	115	Right-handed alpha
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	143	146	Right-handed 310
Helix 6	AA6	A	147	158	Right-handed alpha
Helix 7	AA7	A	170	187	Right-handed alpha
Helix 8	AA8	A	204	211	Right-handed alpha
Helix 9	AA9	A	224	238	Right-handed alpha
Helix 10	AB1	A	251	255	Right-handed 310
Helix 11	AB2	A	276	297	Right-handed alpha
Helix 12	AB3	A	318	327	Right-handed alpha
Helix 13	AB4	A	457	471	Right-handed alpha
Helix 14	AB5	A	499	505	Right-handed 310
Helix 15	AB6	A	561	584	Right-handed alpha
Helix 16	AB7	A	603	616	Right-handed alpha
Helix 17	AB8	A	628	655	Right-handed alpha
Helix 18	AB9	A	669	674	Right-handed alpha
Helix 19	AC1	A	687	693	Right-handed alpha
Helix 20	AC2	A	699	707	Right-handed alpha
Helix 21	AC3	A	713	722	Right-handed alpha
Helix 22	AC4	A	733	743	Right-handed alpha
Helix 23	AC5	A	768	783	Right-handed alpha
Helix 24	AC6	A	783	793	Right-handed alpha
Helix 25	AC7	A	809	812	Right-handed 310
Helix 26	AC8	A	813	841	Right-handed alpha
Helix 27	AC9	B	46	56	Right-handed alpha
Helix 28	AD1	B	77	92	Right-handed alpha
Helix 29	AD2	B	107	119	Right-handed alpha
Helix 30	AD3	B	128	131	Right-handed 310
Helix 31	AD4	B	151	164	Right-handed alpha
Helix 32	AD5	B	178	192	Right-handed alpha
Helix 33	AD6	B	212	222	Right-handed alpha
Helix 34	AD7	B	234	248	Right-handed alpha
Helix 35	AD8	B	288	312	Right-handed alpha
Helix 36	AD9	B	335	340	Right-handed alpha
Helix 37	AE1	B	413	417	Right-handed 310
Helix 38	AE2	B	459	473	Right-handed alpha
Helix 39	AE3	B	495	503	Right-handed alpha
Helix 40	AE4	B	518	522	Right-handed 310
Helix 41	AE5	B	548	552	Right-handed 310
Helix 42	AE6	B	556	579	Right-handed alpha
Helix 43	AE7	B	603	614	Right-handed alpha
Helix 44	AE8	B	625	657	Right-handed alpha
Helix 45	AE9	B	668	673	Right-handed alpha
Helix 46	AF1	B	690	699	Right-handed alpha
Helix 47	AF2	B	700	708	Right-handed alpha
Helix 48	AF3	B	714	724	Right-handed alpha
Helix 49	AF4	B	732	742	Right-handed alpha
Helix 50	AF5	B	752	754	Right-handed 310
Helix 51	AF6	B	772	786	Right-handed alpha
Helix 52	AF7	B	787	798	Right-handed alpha
Helix 53	AF8	B	814	817	Right-handed 310
Helix 54	AF9	B	818	845	Right-handed alpha
Helix 55	AG1	C	35	49	Right-handed alpha
Helix 56	AG2	C	71	86	Right-handed alpha
Helix 57	AG3	C	103	114	Right-handed alpha
Helix 58	AG4	C	145	156	Right-handed alpha
Helix 59	AG5	C	170	184	Right-handed alpha
Helix 60	AG6	C	204	213	Right-handed alpha
Helix 61	AG7	C	224	239	Right-handed alpha
Helix 62	AG8	C	250	254	Right-handed 310
Helix 63	AG9	C	255	261	Right-handed 310
Helix 64	AH1	C	278	297	Right-handed alpha
Helix 65	AH2	C	318	327	Right-handed alpha
Helix 66	AH3	C	458	471	Right-handed alpha
Helix 67	AH4	C	499	508	Right-handed alpha
Helix 68	AH5	C	520	525	Right-handed alpha
Helix 69	AH6	C	559	584	Right-handed alpha
Helix 70	AH7	C	603	616	Right-handed alpha
Helix 71	AH8	C	626	655	Right-handed alpha
Helix 72	AH9	C	669	674	Right-handed alpha
Helix 73	AI1	C	687	695	Right-handed alpha
Helix 74	AI2	C	696	698	Right-handed 310
Helix 75	AI3	C	699	707	Right-handed alpha
Helix 76	AI4	C	713	723	Right-handed alpha
Helix 77	AI5	C	733	743	Right-handed alpha
Helix 78	AI6	C	770	782	Right-handed alpha
Helix 79	AI7	C	783	794	Right-handed alpha
Helix 80	AI8	C	809	841	Right-handed alpha
Helix 81	AI9	D	47	56	Right-handed alpha
Helix 82	AJ1	D	80	92	Right-handed alpha
Helix 83	AJ2	D	107	120	Right-handed alpha
Helix 84	AJ3	D	128	132	Right-handed 310
Helix 85	AJ4	D	151	162	Right-handed alpha
Helix 86	AJ5	D	178	191	Right-handed alpha
Helix 87	AJ6	D	212	223	Right-handed alpha
Helix 88	AJ7	D	233	248	Right-handed alpha
Helix 89	AJ8	D	259	264	Right-handed alpha
Helix 90	AJ9	D	288	312	Right-handed alpha
Helix 91	AK1	D	332	338	Right-handed alpha
Helix 92	AK2	D	460	473	Right-handed alpha
Helix 93	AK3	D	495	503	Right-handed alpha
Helix 94	AK4	D	516	521	Right-handed alpha
Helix 95	AK5	D	557	579	Right-handed alpha
Helix 96	AK6	D	601	614	Right-handed alpha
Helix 97	AK7	D	625	657	Right-handed alpha
Helix 98	AK8	D	668	673	Right-handed alpha
Helix 99	AK9	D	689	699	Right-handed alpha
Helix 100	AL1	D	699	707	Right-handed alpha
Helix 101	AL2	D	713	723	Right-handed alpha
Helix 102	AL3	D	733	742	Right-handed alpha
Helix 103	AL4	D	772	787	Right-handed alpha
Helix 104	AL5	D	789	797	Right-handed alpha
Helix 105	AL6	D	814	817	Right-handed 310
Helix 106	AL7	D	818	845	Right-handed alpha
Helix 107	AL8	J	87	91	Right-handed 310
Helix 108	AL9	K	82	86	Right-handed 310

There are 50 sheets in PDB entry 8VUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	28	32	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	164	165	parallel
Strand 3	A	218	221	parallel
Strand 4	A	246	249	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	354	357	anti-parallel
Strand 3	A	360	363	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	402	first strand
Strand 2	A	473	478	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	454	455	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	489	first strand
Strand 2	A	496	497	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	543	anti-parallel
Strand 4	A	746	748	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	36	41	parallel
Strand 3	B	94	100	parallel
Strand 4	B	123	127	parallel
Strand 5	B	143	145	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	227	229	parallel
Strand 3	B	255	257	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	347	349	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	373	375	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	378	first strand
Strand 2	B	385	386	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	410	first strand
Strand 2	B	475	480	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	456	458	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	453	454	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	760	761	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	684	first strand
Strand 2	B	728	731	parallel
Strand 3	B	535	539	anti-parallel
Strand 4	B	748	750	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	64	first strand
Strand 2	C	26	31	parallel
Strand 3	C	90	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	138	139	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	195	197	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	246	247	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	351	352	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	360	363	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	373	374	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	402	first strand
Strand 2	C	475	478	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	453	457	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	513	first strand
Strand 2	C	761	762	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	748	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	36	41	parallel
Strand 3	D	94	99	parallel
Strand 4	D	123	125	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	204	first strand
Strand 2	D	169	173	parallel
Strand 3	D	227	231	parallel
Strand 4	D	255	257	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	367	first strand
Strand 2	D	373	378	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	410	first strand
Strand 2	D	477	480	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	420	first strand
Strand 2	D	456	459	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	439	first strand
Strand 2	D	452	454	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	513	514	first strand
Strand 2	D	762	763	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	730	732	first strand
Strand 2	D	534	539	anti-parallel
Strand 3	D	748	750	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	20	25	anti-parallel
Strand 3	H	78	81	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	50	52	anti-parallel
Strand 3	H	35	36	anti-parallel
Strand 4	H	97	98	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	40	first strand
Strand 2	H	93	94	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	22	25	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	52	first strand
Strand 2	J	34	36	anti-parallel
Strand 3	J	97	99	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	40	first strand
Strand 2	J	93	94	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	73	first strand
Strand 2	J	78	81	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	5	first strand
Strand 2	K	17	24	anti-parallel
Strand 3	K	73	79	anti-parallel
Strand 4	K	64	67	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	11	first strand
Strand 2	K	105	108	parallel
Strand 3	K	88	94	anti-parallel
Strand 4	K	35	39	anti-parallel
Strand 5	K	46	50	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	11	first strand
Strand 2	K	105	108	parallel
Strand 3	K	88	94	anti-parallel
Strand 4	K	99	101	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	73	78	anti-parallel
Strand 4	L	64	67	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	88	93	anti-parallel
Strand 4	L	100	101	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	49	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	88	93	anti-parallel
Strand 4	L	105	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VUY