Analysis of interatomic Contacts of Structural Units in PDB entry:
8VV0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VV0 entry

There are 5 chains in PDB entry 8VV0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 45	PHE 440
B	THR 45	PHE 440
C	THR 45	PHE 440
D	THR 45	PHE 440
E	THR 45	PHE 440

There are 49 helices in PDB entry 8VV0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	95	98	Right-handed 310
Helix 3	AA3	A	108	115	Right-handed 310
Helix 4	AA4	A	166	169	Right-handed 310
Helix 5	AA5	A	242	249	Right-handed alpha
Helix 6	AA6	A	249	264	Right-handed alpha
Helix 7	AA7	A	270	296	Right-handed alpha
Helix 8	AA8	A	305	332	Right-handed alpha
Helix 9	AA9	A	414	439	Right-handed alpha
Helix 10	AB1	B	48	52	Right-handed 310
Helix 11	AB2	B	95	98	Right-handed 310
Helix 12	AB3	B	108	115	Right-handed 310
Helix 13	AB4	B	166	169	Right-handed 310
Helix 14	AB5	B	194	197	Right-handed 310
Helix 15	AB6	B	242	249	Right-handed alpha
Helix 16	AB7	B	249	264	Right-handed alpha
Helix 17	AB8	B	270	296	Right-handed alpha
Helix 18	AB9	B	305	332	Right-handed alpha
Helix 19	AC1	B	414	439	Right-handed alpha
Helix 20	AC2	C	48	52	Right-handed 310
Helix 21	AC3	C	95	98	Right-handed 310
Helix 22	AC4	C	108	115	Right-handed 310
Helix 23	AC5	C	166	169	Right-handed 310
Helix 24	AC6	C	194	197	Right-handed 310
Helix 25	AC7	C	242	249	Right-handed alpha
Helix 26	AC8	C	249	264	Right-handed alpha
Helix 27	AC9	C	270	296	Right-handed alpha
Helix 28	AD1	C	305	332	Right-handed alpha
Helix 29	AD2	C	414	439	Right-handed alpha
Helix 30	AD3	D	48	52	Right-handed 310
Helix 31	AD4	D	95	98	Right-handed 310
Helix 32	AD5	D	108	115	Right-handed 310
Helix 33	AD6	D	166	169	Right-handed 310
Helix 34	AD7	D	194	197	Right-handed 310
Helix 35	AD8	D	242	249	Right-handed alpha
Helix 36	AD9	D	249	264	Right-handed alpha
Helix 37	AE1	D	270	296	Right-handed alpha
Helix 38	AE2	D	305	332	Right-handed alpha
Helix 39	AE3	D	414	439	Right-handed alpha
Helix 40	AE4	E	48	52	Right-handed 310
Helix 41	AE5	E	95	98	Right-handed 310
Helix 42	AE6	E	108	115	Right-handed 310
Helix 43	AE7	E	166	169	Right-handed 310
Helix 44	AE8	E	194	197	Right-handed 310
Helix 45	AE9	E	242	249	Right-handed alpha
Helix 46	AF1	E	249	264	Right-handed alpha
Helix 47	AF2	E	270	296	Right-handed alpha
Helix 48	AF3	E	305	332	Right-handed alpha
Helix 49	AF4	E	414	439	Right-handed alpha

There are 15 sheets in PDB entry 8VV0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	138	142	anti-parallel
Strand 3	A	147	158	anti-parallel
Strand 4	A	81	93	anti-parallel
Strand 5	A	61	76	anti-parallel
Strand 6	A	188	192	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	147	158	anti-parallel
Strand 3	A	81	93	anti-parallel
Strand 4	A	61	76	anti-parallel
Strand 5	A	199	200	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	171	180	anti-parallel
Strand 3	A	228	239	anti-parallel
Strand 4	A	216	223	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	138	142	anti-parallel
Strand 3	B	147	158	anti-parallel
Strand 4	B	81	93	anti-parallel
Strand 5	B	61	76	anti-parallel
Strand 6	B	188	192	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	147	158	anti-parallel
Strand 3	B	81	93	anti-parallel
Strand 4	B	61	76	anti-parallel
Strand 5	B	199	200	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	171	180	anti-parallel
Strand 3	B	228	239	anti-parallel
Strand 4	B	216	223	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	138	142	anti-parallel
Strand 3	C	147	158	anti-parallel
Strand 4	C	81	93	anti-parallel
Strand 5	C	61	76	anti-parallel
Strand 6	C	188	192	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	130	first strand
Strand 2	C	147	158	anti-parallel
Strand 3	C	81	93	anti-parallel
Strand 4	C	61	76	anti-parallel
Strand 5	C	199	200	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	171	180	anti-parallel
Strand 3	C	228	239	anti-parallel
Strand 4	C	216	223	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	138	142	anti-parallel
Strand 3	D	147	158	anti-parallel
Strand 4	D	81	93	anti-parallel
Strand 5	D	61	76	anti-parallel
Strand 6	D	188	192	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	147	158	anti-parallel
Strand 3	D	81	93	anti-parallel
Strand 4	D	61	76	anti-parallel
Strand 5	D	199	200	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	171	180	anti-parallel
Strand 3	D	228	239	anti-parallel
Strand 4	D	216	223	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	107	first strand
Strand 2	E	138	142	anti-parallel
Strand 3	E	147	158	anti-parallel
Strand 4	E	81	93	anti-parallel
Strand 5	E	61	76	anti-parallel
Strand 6	E	188	192	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	147	158	anti-parallel
Strand 3	E	81	93	anti-parallel
Strand 4	E	61	76	anti-parallel
Strand 5	E	199	200	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	171	180	anti-parallel
Strand 3	E	228	239	anti-parallel
Strand 4	E	216	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VV0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VV0