Analysis of interatomic Contacts of Structural Units in PDB entry:
8VV3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VV3 entry

There are 4 chains in PDB entry 8VV3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 14	GLN 445
B	THR 14	GLN 445
C	THR 14	GLN 445
D	THR 14	GLN 445

There are 44 helices in PDB entry 8VV3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	51	80	Right-handed alpha
Helix 3	AA3	A	90	113	Right-handed alpha
Helix 4	AA4	A	113	136	Right-handed alpha
Helix 5	AA5	A	140	173	Right-handed alpha
Helix 6	AA6	A	178	227	Right-handed alpha
Helix 7	AA7	A	286	341	Right-handed alpha
Helix 8	AA8	A	344	389	Right-handed alpha
Helix 9	AA9	A	394	410	Right-handed alpha
Helix 10	AB1	A	415	419	Right-handed 310
Helix 11	AB2	A	423	445	Right-handed alpha
Helix 12	AB3	B	20	32	Right-handed alpha
Helix 13	AB4	B	51	80	Right-handed alpha
Helix 14	AB5	B	90	113	Right-handed alpha
Helix 15	AB6	B	113	136	Right-handed alpha
Helix 16	AB7	B	140	173	Right-handed alpha
Helix 17	AB8	B	178	227	Right-handed alpha
Helix 18	AB9	B	286	341	Right-handed alpha
Helix 19	AC1	B	344	389	Right-handed alpha
Helix 20	AC2	B	394	410	Right-handed alpha
Helix 21	AC3	B	415	419	Right-handed 310
Helix 22	AC4	B	423	445	Right-handed alpha
Helix 23	AC5	C	20	32	Right-handed alpha
Helix 24	AC6	C	51	80	Right-handed alpha
Helix 25	AC7	C	90	113	Right-handed alpha
Helix 26	AC8	C	113	136	Right-handed alpha
Helix 27	AC9	C	140	173	Right-handed alpha
Helix 28	AD1	C	178	227	Right-handed alpha
Helix 29	AD2	C	286	341	Right-handed alpha
Helix 30	AD3	C	344	389	Right-handed alpha
Helix 31	AD4	C	394	410	Right-handed alpha
Helix 32	AD5	C	415	419	Right-handed 310
Helix 33	AD6	C	423	445	Right-handed alpha
Helix 34	AD7	D	20	32	Right-handed alpha
Helix 35	AD8	D	51	80	Right-handed alpha
Helix 36	AD9	D	90	113	Right-handed alpha
Helix 37	AE1	D	113	136	Right-handed alpha
Helix 38	AE2	D	140	173	Right-handed alpha
Helix 39	AE3	D	178	227	Right-handed alpha
Helix 40	AE4	D	286	341	Right-handed alpha
Helix 41	AE5	D	344	389	Right-handed alpha
Helix 42	AE6	D	394	410	Right-handed alpha
Helix 43	AE7	D	415	419	Right-handed 310
Helix 44	AE8	D	423	445	Right-handed alpha

There are 8 sheets in PDB entry 8VV3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	41	first strand
Strand 2	A	46	50	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	282	283	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	46	50	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	282	283	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	46	50	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	282	283	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	41	first strand
Strand 2	D	46	50	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	274	first strand
Strand 2	D	282	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VV3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VV3