Analysis of interatomic Contacts of Structural Units in PDB entry:
8VV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VV6 entry

There are 4 chains in PDB entry 8VV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 26	GLY 175
B	LYS 25	GLY 175
C	GLU 26	GLY 175
D	GLU 26	ALA 174

There are 9 helices in PDB entry 8VV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed 310
Helix 2	AA2	A	58	62	Right-handed 310
Helix 3	AA3	B	52	56	Right-handed 310
Helix 4	AA4	B	58	62	Right-handed 310
Helix 5	AA5	B	139	143	Right-handed 310
Helix 6	AA6	C	58	62	Right-handed 310
Helix 7	AA7	D	52	56	Right-handed 310
Helix 8	AA8	D	58	62	Right-handed 310
Helix 9	AA9	D	139	143	Right-handed 310

There are 8 sheets in PDB entry 8VV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	35	first strand
Strand 2	A	38	45	anti-parallel
Strand 3	A	64	72	anti-parallel
Strand 4	A	116	123	anti-parallel
Strand 5	A	109	113	anti-parallel
Strand 6	B	149	151	parallel
Strand 7	A	50	51	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	90	97	anti-parallel
Strand 3	A	129	138	anti-parallel
Strand 4	A	165	173	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	35	first strand
Strand 2	B	38	45	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	116	123	anti-parallel
Strand 5	B	103	113	anti-parallel
Strand 6	A	149	151	parallel
Strand 7	B	50	51	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	35	first strand
Strand 2	B	38	45	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	116	123	anti-parallel
Strand 5	B	103	113	anti-parallel
Strand 6	B	90	97	anti-parallel
Strand 7	B	129	138	anti-parallel
Strand 8	B	165	173	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	35	first strand
Strand 2	C	38	45	anti-parallel
Strand 3	C	64	72	anti-parallel
Strand 4	C	116	123	anti-parallel
Strand 5	C	109	113	anti-parallel
Strand 6	D	149	151	parallel
Strand 7	C	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	107	first strand
Strand 2	C	90	97	anti-parallel
Strand 3	C	129	138	anti-parallel
Strand 4	C	165	173	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	35	first strand
Strand 2	D	38	45	anti-parallel
Strand 3	D	64	72	anti-parallel
Strand 4	D	116	123	anti-parallel
Strand 5	D	103	113	anti-parallel
Strand 6	C	149	151	parallel
Strand 7	D	50	51	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	35	first strand
Strand 2	D	38	45	anti-parallel
Strand 3	D	64	72	anti-parallel
Strand 4	D	116	123	anti-parallel
Strand 5	D	103	113	anti-parallel
Strand 6	D	90	97	anti-parallel
Strand 7	D	129	138	anti-parallel
Strand 8	D	165	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VV6