Analysis of interatomic Contacts of Structural Units in PDB entry:
8VVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VVC entry

There is 1 chain in PDB entry 8VVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 1531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8VVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
30 58Right-handed alpha
Helix 4
AA4
A
68 98Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
108 131Right-handed alpha
Helix 7
AA7
A
137 161Right-handed alpha
Helix 8
AA8
A
170 189Right-handed alpha
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
214 221Right-handed alpha
Helix 11
AB2
A
222 234Right-handed alpha
Helix 12
AB3
A
237 241Right-handed 310
Helix 13
AB4
A
249 268Right-handed alpha
Helix 14
AB5
A
312 318Right-handed alpha
Helix 15
AB6
A
321 324Right-handed 310
Helix 16
AB7
A
325 355Right-handed alpha
Helix 17
AB8
A
359 410Right-handed alpha
Helix 18
AB9
A
423 433Right-handed alpha
Helix 19
AC1
A
435 441Right-handed alpha
Helix 20
AC2
A
442 462Right-handed alpha
Helix 21
AC3
A
464 512Right-handed alpha
Helix 22
AC4
A
519 571Right-handed alpha
Helix 23
AC5
A
578 599Right-handed alpha
Helix 24
AC6
A
601 621Right-handed alpha
Helix 25
AC7
A
683 692Right-handed alpha
Helix 26
AC8
A
722 728Right-handed alpha
Helix 27
AC9
A
735 745Right-handed alpha
Helix 28
AD1
A
745 753Right-handed alpha
Helix 29
AD2
A
769 784Right-handed alpha
Helix 30
AD3
A
794 798Right-handed 310
Helix 31
AD4
A
799 810Right-handed alpha
Helix 32
AD5
A
852 859Right-handed alpha
Helix 33
AD6
A
860 868Right-handed alpha
Helix 34
AD7
A
974 1001Right-handed alpha
Helix 35
AD8
A
1012 1058Right-handed alpha
Helix 36
AD9
A
1061 1066Right-handed alpha
Helix 37
AE1
A
1069 1085Right-handed alpha
Helix 38
AE2
A
1086 1110Right-handed alpha
Helix 39
AE3
A
1112 1117Right-handed 310
Helix 40
AE4
A
1118 1161Right-handed alpha
Helix 41
AE5
A
1161 1168Right-handed alpha
Helix 42
AE6
A
1171 1220Right-handed alpha
Helix 43
AE7
A
1221 1225Right-handed 310
Helix 44
AE8
A
1226 1254Right-handed alpha
Helix 45
AE9
A
1254 1268Right-handed alpha
Helix 46
AF1
A
1332 1342Right-handed alpha
Helix 47
AF2
A
1362 1368Right-handed alpha
Helix 48
AF3
A
1384 1388Right-handed alpha
Helix 49
AF4
A
1395 1406Right-handed alpha
Helix 50
AF5
A
1409 1415Right-handed alpha
Helix 51
AF6
A
1417 1420Right-handed 310
Helix 52
AF7
A
1424 1428Right-handed 310
Helix 53
AF8
A
1431 1447Right-handed alpha
Helix 54
AF9
A
1461 1477Right-handed alpha
Helix 55
AG1
A
1510 1517Right-handed alpha
Helix 56
AG2
A
1519 1528Right-handed alpha
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There are 8 sheets in PDB entry 8VVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 669first strand
Strand 2
A
642 652anti-parallel
Strand 3
A
696 704anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 711first strand
Strand 2
A
788 792parallel
Strand 3
A
821 825parallel
Strand 4
A
673 677parallel
Strand 5
A
837 842parallel
Strand 6
A
845 851anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
720 721first strand
Strand 2
A
760 761anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1295 1298first strand
Strand 2
A
1313 1315anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1497 1501parallel
Strand 3
A
1504 1508anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1352 1353first strand
Strand 2
A
1356 1357anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1371 1372first strand
Strand 2
A
1450 1452parallel
Strand 3
A
1480 1481parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1382 1383first strand
Strand 2
A
1422 1423anti-parallel
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