Analysis of interatomic Contacts of Structural Units in PDB entry:
8VVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VVD entry

There are 2 chains in PDB entry 8VVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 62GLU 993
B
 G 2 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8VVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 82Right-handed alpha
Helix 2
AA2
A
91 107Right-handed alpha
Helix 3
AA3
A
179 194Right-handed alpha
Helix 4
AA4
A
196 208Right-handed alpha
Helix 5
AA5
A
209 213Right-handed 310
Helix 6
AA6
A
214 224Right-handed alpha
Helix 7
AA7
A
237 253Right-handed alpha
Helix 8
AA8
A
255 258Right-handed 310
Helix 9
AA9
A
267 282Right-handed alpha
Helix 10
AB1
A
314 324Right-handed alpha
Helix 11
AB2
A
342 356Right-handed alpha
Helix 12
AB3
A
373 380Right-handed alpha
Helix 13
AB4
A
399 408Right-handed alpha
Helix 14
AB5
A
432 450Right-handed alpha
Helix 15
AB6
A
451 456Right-handed alpha
Helix 16
AB7
A
457 467Right-handed alpha
Helix 17
AB8
A
473 488Right-handed alpha
Helix 18
AB9
A
499 513Right-handed alpha
Helix 19
AC1
A
514 518Right-handed 310
Helix 20
AC2
A
531 536Right-handed alpha
Helix 21
AC3
A
554 559Right-handed alpha
Helix 22
AC4
A
594 605Right-handed alpha
Helix 23
AC5
A
618 624Right-handed alpha
Helix 24
AC6
A
631 635Right-handed 310
Helix 25
AC7
A
638 648Right-handed alpha
Helix 26
AC8
A
652 660Right-handed alpha
Helix 27
AC9
A
665 679Right-handed alpha
Helix 28
AD1
A
689 698Right-handed alpha
Helix 29
AD2
A
701 714Right-handed alpha
Helix 30
AD3
A
716 729Right-handed alpha
Helix 31
AD4
A
740 751Right-handed alpha
Helix 32
AD5
A
758 775Right-handed alpha
Helix 33
AD6
A
775 786Right-handed alpha
Helix 34
AD7
A
789 811Right-handed alpha
Helix 35
AD8
A
820 824Right-handed 310
Helix 36
AD9
A
829 841Right-handed alpha
Helix 37
AE1
A
908 916Right-handed alpha
Helix 38
AE2
A
941 965Right-handed alpha
Helix 39
AE3
A
976 989Right-handed alpha
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There are 4 sheets in PDB entry 8VVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
292 296anti-parallel
Strand 3
A
308 313parallel
Strand 4
A
260 265parallel
Strand 5
A
332 335parallel
Strand 6
A
363 368parallel
Strand 7
A
227 232parallel
Strand 8
A
385 388parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
611 615parallel
Strand 3
A
565 570parallel
Strand 4
A
492 496parallel
Strand 5
A
547 552parallel
Strand 6
A
521 526parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 580first strand
Strand 2
A
585 592anti-parallel
Strand 3
A
893 895parallel
Strand 4
A
899 901anti-parallel
Strand 5
A
867 871parallel
Strand 6
A
859 863anti-parallel
Strand 7
A
845 850anti-parallel
Strand 8
A
887 890anti-parallel
Strand 9
A
904 906anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
919 924first strand
Strand 2
A
927 932anti-parallel
Strand 3
A
936 939anti-parallel
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