Analysis of interatomic Contacts of Structural Units in PDB entry:
8VVH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VVH entry

There are 4 chains in PDB entry 8VVH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLN 393
B	SER 34	LYS 387
H	LEU 2	VAL 116
L	ASN 1	THR 108

There are 21 helices in PDB entry 8VVH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	51	Right-handed alpha
Helix 2	AA2	A	70	86	Right-handed alpha
Helix 3	AA3	A	104	115	Right-handed alpha
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	143	147	Right-handed 310
Helix 6	AA6	A	148	159	Right-handed alpha
Helix 7	AA7	A	170	185	Right-handed alpha
Helix 8	AA8	A	204	212	Right-handed alpha
Helix 9	AA9	A	224	238	Right-handed alpha
Helix 10	AB1	A	276	296	Right-handed alpha
Helix 11	AB2	A	318	327	Right-handed alpha
Helix 12	AB3	B	77	92	Right-handed alpha
Helix 13	AB4	B	107	119	Right-handed alpha
Helix 14	AB5	B	130	132	Right-handed 310
Helix 15	AB6	B	150	164	Right-handed alpha
Helix 16	AB7	B	178	192	Right-handed alpha
Helix 17	AB8	B	212	223	Right-handed alpha
Helix 18	AB9	B	233	248	Right-handed alpha
Helix 19	AC1	B	259	264	Right-handed alpha
Helix 20	AC2	B	288	312	Right-handed alpha
Helix 21	AC3	B	333	339	Right-handed alpha

There are 12 sheets in PDB entry 8VVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	29	32	parallel
Strand 3	A	90	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	164	168	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	373	374	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	38	41	parallel
Strand 3	B	98	101	parallel
Strand 4	B	124	128	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	170	173	parallel
Strand 3	B	227	231	parallel
Strand 4	B	255	258	parallel
Strand 5	B	278	282	parallel
Strand 6	B	362	367	anti-parallel
Strand 7	B	373	380	anti-parallel
Strand 8	B	383	385	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	347	348	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	78	81	anti-parallel
Strand 3	H	70	73	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	H	33	36	anti-parallel
Strand 3	H	97	100	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	40	first strand
Strand 2	H	93	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	73	78	anti-parallel
Strand 4	L	63	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	50	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	87	94	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	50	first strand
Strand 2	L	35	39	anti-parallel
Strand 3	L	87	94	anti-parallel
Strand 4	L	105	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VVH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VVH