Analysis of interatomic Contacts of Structural Units in PDB entry:
8VVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VVN entry

There are 7 chains in PDB entry 8VVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TRP 19	VAL 243
A	LYS 11	ASP 236
C	GLU 4	PRO 235
D	ARG 5	PRO 235
E	GLU 4	PRO 235
F	GLU 4	PRO 235
G	GLU 4	PRO 235

There are 63 helices in PDB entry 8VVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	59	Right-handed alpha
Helix 2	AA2	B	59	78	Right-handed alpha
Helix 3	AA3	B	113	131	Right-handed alpha
Helix 4	AA4	B	132	136	Right-handed 310
Helix 5	AA5	B	157	177	Right-handed alpha
Helix 6	AA6	B	213	218	Right-handed alpha
Helix 7	AA7	B	233	241	Right-handed alpha
Helix 8	AA8	A	16	18	Right-handed 310
Helix 9	AA9	A	19	78	Right-handed alpha
Helix 10	AB1	A	113	131	Right-handed alpha
Helix 11	AB2	A	132	136	Right-handed 310
Helix 12	AB3	A	157	177	Right-handed alpha
Helix 13	AB4	A	213	219	Right-handed alpha
Helix 14	AB5	C	8	13	Right-handed 310
Helix 15	AB6	C	25	67	Right-handed alpha
Helix 16	AB7	C	70	89	Right-handed alpha
Helix 17	AB8	C	95	105	Right-handed alpha
Helix 18	AB9	C	123	128	Right-handed alpha
Helix 19	AC1	C	129	134	Right-handed alpha
Helix 20	AC2	C	134	139	Right-handed alpha
Helix 21	AC3	C	140	145	Right-handed alpha
Helix 22	AC4	C	145	168	Right-handed alpha
Helix 23	AC5	C	176	190	Right-handed alpha
Helix 24	AC6	C	190	234	Right-handed alpha
Helix 25	AC7	D	8	13	Right-handed 310
Helix 26	AC8	D	25	65	Right-handed alpha
Helix 27	AC9	D	75	89	Right-handed alpha
Helix 28	AD1	D	94	106	Right-handed alpha
Helix 29	AD2	D	123	127	Right-handed 310
Helix 30	AD3	D	129	134	Right-handed alpha
Helix 31	AD4	D	140	168	Right-handed alpha
Helix 32	AD5	D	176	234	Right-handed alpha
Helix 33	AD6	E	9	13	Right-handed 310
Helix 34	AD7	E	25	67	Right-handed alpha
Helix 35	AD8	E	76	90	Right-handed alpha
Helix 36	AD9	E	95	105	Right-handed alpha
Helix 37	AE1	E	123	127	Right-handed 310
Helix 38	AE2	E	129	134	Right-handed alpha
Helix 39	AE3	E	145	168	Right-handed alpha
Helix 40	AE4	E	176	195	Right-handed alpha
Helix 41	AE5	E	195	234	Right-handed alpha
Helix 42	AE6	F	8	13	Right-handed 310
Helix 43	AE7	F	25	65	Right-handed alpha
Helix 44	AE8	F	70	73	Right-handed 310
Helix 45	AE9	F	74	89	Right-handed alpha
Helix 46	AF1	F	95	106	Right-handed alpha
Helix 47	AF2	F	123	127	Right-handed 310
Helix 48	AF3	F	129	134	Right-handed alpha
Helix 49	AF4	F	134	139	Right-handed alpha
Helix 50	AF5	F	140	145	Right-handed alpha
Helix 51	AF6	F	145	168	Right-handed alpha
Helix 52	AF7	F	176	234	Right-handed alpha
Helix 53	AF8	G	8	13	Right-handed 310
Helix 54	AF9	G	25	66	Right-handed alpha
Helix 55	AG1	G	73	77	Right-handed 310
Helix 56	AG2	G	79	89	Right-handed alpha
Helix 57	AG3	G	95	105	Right-handed alpha
Helix 58	AG4	G	123	127	Right-handed 310
Helix 59	AG5	G	129	134	Right-handed alpha
Helix 60	AG6	G	134	139	Right-handed alpha
Helix 61	AG7	G	140	145	Right-handed alpha
Helix 62	AG8	G	145	169	Right-handed alpha
Helix 63	AG9	G	176	234	Right-handed alpha

There are 6 sheets in PDB entry 8VVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	86	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	222	229	anti-parallel
Strand 4	B	138	146	anti-parallel
Strand 5	B	196	200	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	91	94	anti-parallel
Strand 3	A	222	229	anti-parallel
Strand 4	A	138	146	anti-parallel
Strand 5	A	196	200	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	112	first strand
Strand 2	C	115	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	111	first strand
Strand 2	E	116	119	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	112	first strand
Strand 2	F	115	118	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	107	109	first strand
Strand 2	G	118	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VVN