Analysis of interatomic Contacts of Structural Units in PDB entry:
8VVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VVY entry

There are 2 chains in PDB entry 8VVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 727
C
 SER 13SER 1220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 8VVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
27 42Right-handed alpha
Helix 3
AA3
A
49 72Right-handed alpha
Helix 4
AA4
A
79 103Right-handed alpha
Helix 5
AA5
A
104 106Right-handed 310
Helix 6
AA6
A
109 115Right-handed alpha
Helix 7
AA7
A
116 122Right-handed 310
Helix 8
AA8
A
123 125Right-handed 310
Helix 9
AA9
A
126 136Right-handed alpha
Helix 10
AB1
A
136 158Right-handed alpha
Helix 11
AB2
A
162 176Right-handed alpha
Helix 12
AB3
A
190 197Right-handed alpha
Helix 13
AB4
A
197 219Right-handed alpha
Helix 14
AB5
A
221 244Right-handed alpha
Helix 15
AB6
A
247 260Right-handed alpha
Helix 16
AB7
A
261 263Right-handed 310
Helix 17
AB8
A
264 277Right-handed alpha
Helix 18
AB9
A
280 292Right-handed alpha
Helix 19
AC1
A
298 321Right-handed alpha
Helix 20
AC2
A
322 326Right-handed 310
Helix 21
AC3
A
327 349Right-handed alpha
Helix 22
AC4
A
353 365Right-handed alpha
Helix 23
AC5
A
371 377Right-handed alpha
Helix 24
AC6
A
379 381Right-handed 310
Helix 25
AC7
A
382 396Right-handed alpha
Helix 26
AC8
A
403 419Right-handed alpha
Helix 27
AC9
A
424 442Right-handed alpha
Helix 28
AD1
A
446 462Right-handed alpha
Helix 29
AD2
A
463 492Right-handed alpha
Helix 30
AD3
A
524 539Right-handed alpha
Helix 31
AD4
A
570 579Right-handed alpha
Helix 32
AD5
A
587 595Right-handed alpha
Helix 33
AD6
A
597 611Right-handed alpha
Helix 34
AD7
A
653 688Right-handed alpha
Helix 35
AD8
A
693 700Right-handed alpha
Helix 36
AD9
A
710 722Right-handed alpha
Helix 37
AE1
C
14 24Right-handed alpha
Helix 38
AE2
C
25 27Right-handed 310
Helix 39
AE3
C
30 42Right-handed alpha
Helix 40
AE4
C
54 65Right-handed alpha
Helix 41
AE5
C
69 74Right-handed 310
Helix 42
AE6
C
76 89Right-handed alpha
Helix 43
AE7
C
91 107Right-handed alpha
Helix 44
AE8
C
112 128Right-handed alpha
Helix 45
AE9
C
137 155Right-handed alpha
Helix 46
AF1
C
158 174Right-handed alpha
Helix 47
AF2
C
183 192Right-handed alpha
Helix 48
AF3
C
193 197Right-handed 310
Helix 49
AF4
C
199 214Right-handed alpha
Helix 50
AF5
C
220 233Right-handed alpha
Helix 51
AF6
C
241 260Right-handed alpha
Helix 52
AF7
C
263 279Right-handed alpha
Helix 53
AF8
C
282 300Right-handed alpha
Helix 54
AF9
C
304 306Right-handed 310
Helix 55
AG1
C
307 319Right-handed alpha
Helix 56
AG2
C
358 377Right-handed alpha
Helix 57
AG3
C
380 388Right-handed alpha
Helix 58
AG4
C
388 395Right-handed alpha
Helix 59
AG5
C
396 398Right-handed 310
Helix 60
AG6
C
401 419Right-handed alpha
Helix 61
AG7
C
432 453Right-handed alpha
Helix 62
AG8
C
454 458Right-handed 310
Helix 63
AG9
C
460 478Right-handed alpha
Helix 64
AH1
C
482 484Right-handed 310
Helix 65
AH2
C
485 498Right-handed alpha
Helix 66
AH3
C
503 521Right-handed alpha
Helix 67
AH4
C
522 527Right-handed 310
Helix 68
AH5
C
529 542Right-handed alpha
Helix 69
AH6
C
545 564Right-handed alpha
Helix 70
AH7
C
574 590Right-handed alpha
Helix 71
AH8
C
595 618Right-handed alpha
Helix 72
AH9
C
620 632Right-handed alpha
Helix 73
AI1
C
637 651Right-handed alpha
Helix 74
AI2
C
657 659Right-handed 310
Helix 75
AI3
C
660 674Right-handed alpha
Helix 76
AI4
C
676 695Right-handed alpha
Helix 77
AI5
C
699 708Right-handed alpha
Helix 78
AI6
C
709 713Right-handed 310
Helix 79
AI7
C
719 736Right-handed alpha
Helix 80
AI8
C
737 741Right-handed 310
Helix 81
AI9
C
743 757Right-handed alpha
Helix 82
AJ1
C
761 778Right-handed alpha
Helix 83
AJ2
C
787 799Right-handed alpha
Helix 84
AJ3
C
808 826Right-handed alpha
Helix 85
AJ4
C
830 842Right-handed alpha
Helix 86
AJ5
C
847 865Right-handed alpha
Helix 87
AJ6
C
872 882Right-handed alpha
Helix 88
AJ7
C
885 903Right-handed alpha
Helix 89
AJ8
C
903 918Right-handed alpha
Helix 90
AJ9
C
921 936Right-handed alpha
Helix 91
AK1
C
937 940Right-handed 310
Helix 92
AK2
C
941 953Right-handed alpha
Helix 93
AK3
C
960 976Right-handed alpha
Helix 94
AK4
C
978 992Right-handed alpha
Helix 95
AK5
C
994 1008Right-handed alpha
Helix 96
AK6
C
1016 1029Right-handed alpha
Helix 97
AK7
C
1035 1053Right-handed alpha
Helix 98
AK8
C
1054 1059Right-handed alpha
Helix 99
AK9
C
1060 1063Right-handed 310
Helix 100
AL1
C
1064 1073Right-handed alpha
Helix 101
AL2
C
1094 1112Right-handed alpha
Helix 102
AL3
C
1113 1116Right-handed 310
Helix 103
AL4
C
1117 1130Right-handed alpha
Helix 104
AL5
C
1132 1150Right-handed alpha
Helix 105
AL6
C
1150 1171Right-handed alpha
Helix 106
AL7
C
1178 1201Right-handed alpha
Helix 107
AL8
C
1203 1207Right-handed 310
Helix 108
AL9
C
1208 1220Right-handed alpha
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There are 3 sheets in PDB entry 8VVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 557first strand
Strand 2
A
564 569anti-parallel
Strand 3
A
646 648parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 586first strand
Strand 2
A
633 636anti-parallel
Strand 3
A
614 615anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1079 1080first strand
Strand 2
C
1091 1092anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il