Analysis of interatomic Contacts of Structural Units in PDB entry:
8VW2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VW2 entry

There are 2 chains in PDB entry 8VW2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 198
A
 LEU 200HIS 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8VW2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
41 47Right-handed 310
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
79 88Right-handed alpha
Helix 5
AA5
A
94 103Right-handed alpha
Helix 6
AA6
A
115 130Right-handed alpha
Helix 7
AA7
A
143 148Right-handed 310
Helix 8
AA8
A
160 166Right-handed alpha
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
191 201Right-handed alpha
Helix 11
AB2
A
202 204Right-handed 310
Helix 12
AB3
A
215 219Right-handed 310
Helix 13
AB4
A
260 262Right-handed 310
Helix 14
AB5
A
266 284Right-handed alpha
Helix 15
AB6
A
286 297Right-handed alpha
Helix 16
AB7
A
323 332Right-handed alpha
Helix 17
AB8
A
353 360Right-handed 310
Helix 18
AB9
A
373 379Right-handed alpha
Helix 19
AC1
A
380 383Right-handed 310
Helix 20
AC2
A
390 399Right-handed alpha
Helix 21
AC3
A
400 402Right-handed 310
Helix 22
AC4
A
422 439Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8VW2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
33 36parallel
Strand 3
A
9 12parallel
Strand 4
A
68 71parallel
Strand 5
A
91 93parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
154 158parallel
Strand 3
A
107 111parallel
Strand 4
A
174 177parallel
Strand 5
A
209 212parallel
Strand 6
A
228 231parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 243first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
254 258anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 310first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
407 410parallel
Strand 4
A
340 345parallel
Strand 5
A
365 370parallel
Strand 6
A
385 387parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il