Analysis of interatomic Contacts of Structural Units in PDB entry:
8VW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VW6 entry

There are 2 chains in PDB entry 8VW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 346
B
 MET 1VAL 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8VW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 40Right-handed alpha
Helix 2
AA2
A
63 74Right-handed alpha
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
90 106Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
137 158Right-handed alpha
Helix 7
AA7
A
191 202Right-handed alpha
Helix 8
AA8
A
211 230Right-handed alpha
Helix 9
AA9
A
248 260Right-handed alpha
Helix 10
AB1
A
266 270Right-handed 310
Helix 11
AB2
A
271 279Right-handed alpha
Helix 12
AB3
A
287 291Right-handed 310
Helix 13
AB4
A
304 319Right-handed alpha
Helix 14
AB5
A
329 341Right-handed alpha
Helix 15
AB6
A
342 345Right-handed 310
Helix 16
AB7
B
25 40Right-handed alpha
Helix 17
AB8
B
63 74Right-handed alpha
Helix 18
AB9
B
85 89Right-handed 310
Helix 19
AC1
B
90 106Right-handed alpha
Helix 20
AC2
B
124 132Right-handed alpha
Helix 21
AC3
B
138 158Right-handed alpha
Helix 22
AC4
B
191 202Right-handed alpha
Helix 23
AC5
B
211 231Right-handed alpha
Helix 24
AC6
B
248 260Right-handed alpha
Helix 25
AC7
B
266 270Right-handed 310
Helix 26
AC8
B
271 279Right-handed alpha
Helix 27
AC9
B
287 291Right-handed 310
Helix 28
AD1
B
304 319Right-handed alpha
Helix 29
AD2
B
329 341Right-handed alpha
Helix 30
AD3
B
342 345Right-handed 310
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There are 4 sheets in PDB entry 8VW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
237 245parallel
Strand 3
A
322 326parallel
Strand 4
A
2 6parallel
Strand 5
A
43 46parallel
Strand 6
A
79 84parallel
Strand 7
A
115 119parallel
Strand 8
A
185 187parallel
Strand 9
A
204 207parallel
Strand 10
A
237 245parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
170 173anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
237 245parallel
Strand 3
B
322 326parallel
Strand 4
B
2 6parallel
Strand 5
B
43 46parallel
Strand 6
B
79 84parallel
Strand 7
B
115 119parallel
Strand 8
B
185 187parallel
Strand 9
B
204 207parallel
Strand 10
B
237 245parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
170 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il