Analysis of interatomic Contacts of Structural Units in PDB entry:
8VWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VWA entry

There is 1 chain in PDB entry 8VWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 156PHE 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8VWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
159 163Right-handed 310
Helix 2
AA2
A
166 182Right-handed alpha
Helix 3
AA3
A
182 188Right-handed alpha
Helix 4
AA4
A
206 218Right-handed alpha
Helix 5
AA5
A
228 230Right-handed 310
Helix 6
AA6
A
238 252Right-handed alpha
Helix 7
AA7
A
262 265Right-handed 310
Helix 8
AA8
A
281 292Right-handed alpha
Helix 9
AA9
A
295 298Right-handed 310
Helix 10
AB1
A
308 312Right-handed 310
Helix 11
AB2
A
313 318Right-handed 310
Helix 12
AB3
A
332 343Right-handed alpha
Helix 13
AB4
A
354 361Right-handed alpha
Helix 14
AB5
A
366 383Right-handed alpha
Helix 15
AB6
A
390 403Right-handed alpha
Helix 16
AB7
A
413 434Right-handed alpha
Helix 17
AB8
A
468 480Right-handed alpha
Helix 18
AB9
A
480 490Right-handed alpha
Helix 19
AC1
A
494 516Right-handed alpha
Helix 20
AC2
A
551 575Right-handed alpha
Helix 21
AC3
A
575 590Right-handed alpha
Helix 22
AC4
A
594 604Right-handed alpha
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There are 2 sheets in PDB entry 8VWA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
255 260parallel
Strand 3
A
300 306parallel
Strand 4
A
196 200parallel
Strand 5
A
322 327parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
591 593anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il