Analysis of interatomic Contacts of Structural Units in PDB entry:
8VWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VWK entry

There is 1 chain in PDB entry 8VWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ALA 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8VWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
22 30Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
75 83Right-handed alpha
Helix 5
AA5
A
87 91Right-handed 310
Helix 6
AA6
A
92 108Right-handed alpha
Helix 7
AA7
A
109 131Right-handed alpha
Helix 8
AA8
A
137 154Right-handed alpha
Helix 9
AA9
A
158 176Right-handed alpha
Helix 10
AB1
A
181 206Right-handed alpha
Helix 11
AB2
A
214 221Right-handed alpha
Helix 12
AB3
A
231 241Right-handed alpha
Helix 13
AB4
A
243 263Right-handed alpha
Helix 14
AB5
A
263 277Right-handed alpha
Helix 15
AB6
A
284 298Right-handed alpha
Helix 16
AB7
A
329 334Right-handed alpha
Helix 17
AB8
A
346 351Right-handed 310
Helix 18
AB9
A
355 359Right-handed 310
Helix 19
AC1
A
378 395Right-handed alpha
Helix 20
AC2
A
403 408Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8VWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
324 328parallel
Strand 4
A
303 308anti-parallel
Strand 5
A
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
423 426anti-parallel
Strand 3
A
398 400anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
317 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il