Analysis of interatomic Contacts of Structural Units in PDB entry:
8VWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VWP entry

There are 4 chains in PDB entry 8VWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 75	ILE 607
B	LEU 75	ILE 607
C	LEU 75	ILE 607
D	LEU 75	ILE 607

There are 36 helices in PDB entry 8VWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	99	Right-handed alpha
Helix 2	AA2	A	99	113	Right-handed alpha
Helix 3	AA3	A	113	142	Right-handed alpha
Helix 4	AA4	A	166	170	Right-handed 310
Helix 5	AA5	A	278	280	Right-handed 310
Helix 6	AA6	A	391	399	Right-handed alpha
Helix 7	AA7	A	400	405	Right-handed 310
Helix 8	AA8	A	419	423	Right-handed 310
Helix 9	AA9	A	433	437	Right-handed 310
Helix 10	AB1	B	76	99	Right-handed alpha
Helix 11	AB2	B	99	113	Right-handed alpha
Helix 12	AB3	B	113	142	Right-handed alpha
Helix 13	AB4	B	166	170	Right-handed 310
Helix 14	AB5	B	278	280	Right-handed 310
Helix 15	AB6	B	391	399	Right-handed alpha
Helix 16	AB7	B	400	405	Right-handed 310
Helix 17	AB8	B	419	423	Right-handed 310
Helix 18	AB9	B	433	437	Right-handed 310
Helix 19	AC1	C	76	99	Right-handed alpha
Helix 20	AC2	C	99	113	Right-handed alpha
Helix 21	AC3	C	113	142	Right-handed alpha
Helix 22	AC4	C	166	170	Right-handed 310
Helix 23	AC5	C	278	280	Right-handed 310
Helix 24	AC6	C	391	399	Right-handed alpha
Helix 25	AC7	C	400	405	Right-handed 310
Helix 26	AC8	C	419	423	Right-handed 310
Helix 27	AC9	C	433	437	Right-handed 310
Helix 28	AD1	D	76	99	Right-handed alpha
Helix 29	AD2	D	99	113	Right-handed alpha
Helix 30	AD3	D	113	142	Right-handed alpha
Helix 31	AD4	D	166	170	Right-handed 310
Helix 32	AD5	D	278	280	Right-handed 310
Helix 33	AD6	D	391	399	Right-handed alpha
Helix 34	AD7	D	400	405	Right-handed 310
Helix 35	AD8	D	419	423	Right-handed 310
Helix 36	AD9	D	433	437	Right-handed 310

There are 32 sheets in PDB entry 8VWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	560	571	anti-parallel
Strand 3	A	574	584	anti-parallel
Strand 4	A	592	606	anti-parallel
Strand 5	A	193	199	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	560	571	anti-parallel
Strand 3	A	574	584	anti-parallel
Strand 4	A	592	606	anti-parallel
Strand 5	A	204	205	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	227	first strand
Strand 2	A	231	240	anti-parallel
Strand 3	A	248	259	anti-parallel
Strand 4	A	267	275	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	289	first strand
Strand 2	A	294	300	anti-parallel
Strand 3	A	317	322	anti-parallel
Strand 4	A	329	333	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	426	431	parallel
Strand 3	A	408	418	anti-parallel
Strand 4	A	360	370	anti-parallel
Strand 5	A	344	349	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	426	431	parallel
Strand 3	A	408	418	anti-parallel
Strand 4	A	360	370	anti-parallel
Strand 5	A	355	357	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	448	first strand
Strand 2	A	451	456	anti-parallel
Strand 3	A	466	470	anti-parallel
Strand 4	A	479	480	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	516	first strand
Strand 2	A	524	531	anti-parallel
Strand 3	A	536	543	anti-parallel
Strand 4	A	549	553	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	560	571	anti-parallel
Strand 3	B	574	584	anti-parallel
Strand 4	B	592	606	anti-parallel
Strand 5	B	193	199	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	560	571	anti-parallel
Strand 3	B	574	584	anti-parallel
Strand 4	B	592	606	anti-parallel
Strand 5	B	204	205	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	227	first strand
Strand 2	B	231	240	anti-parallel
Strand 3	B	248	259	anti-parallel
Strand 4	B	267	275	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	289	first strand
Strand 2	B	294	300	anti-parallel
Strand 3	B	317	322	anti-parallel
Strand 4	B	329	333	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	426	431	parallel
Strand 3	B	408	418	anti-parallel
Strand 4	B	360	370	anti-parallel
Strand 5	B	344	349	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	426	431	parallel
Strand 3	B	408	418	anti-parallel
Strand 4	B	360	370	anti-parallel
Strand 5	B	355	357	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	448	first strand
Strand 2	B	451	456	anti-parallel
Strand 3	B	466	470	anti-parallel
Strand 4	B	479	480	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	516	first strand
Strand 2	B	524	531	anti-parallel
Strand 3	B	536	543	anti-parallel
Strand 4	B	549	553	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	560	571	anti-parallel
Strand 3	C	574	584	anti-parallel
Strand 4	C	592	606	anti-parallel
Strand 5	C	193	199	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	560	571	anti-parallel
Strand 3	C	574	584	anti-parallel
Strand 4	C	592	606	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	227	first strand
Strand 2	C	231	240	anti-parallel
Strand 3	C	248	259	anti-parallel
Strand 4	C	267	275	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	289	first strand
Strand 2	C	294	300	anti-parallel
Strand 3	C	317	322	anti-parallel
Strand 4	C	329	333	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	426	431	parallel
Strand 3	C	408	418	anti-parallel
Strand 4	C	360	370	anti-parallel
Strand 5	C	344	349	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	426	431	parallel
Strand 3	C	408	418	anti-parallel
Strand 4	C	360	370	anti-parallel
Strand 5	C	355	357	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	448	first strand
Strand 2	C	451	456	anti-parallel
Strand 3	C	466	470	anti-parallel
Strand 4	C	479	480	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	516	first strand
Strand 2	C	524	531	anti-parallel
Strand 3	C	536	543	anti-parallel
Strand 4	C	549	553	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	D	560	571	anti-parallel
Strand 3	D	574	584	anti-parallel
Strand 4	D	592	606	anti-parallel
Strand 5	D	193	199	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	D	560	571	anti-parallel
Strand 3	D	574	584	anti-parallel
Strand 4	D	592	606	anti-parallel
Strand 5	D	204	205	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	227	first strand
Strand 2	D	231	240	anti-parallel
Strand 3	D	248	259	anti-parallel
Strand 4	D	267	275	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	289	first strand
Strand 2	D	294	300	anti-parallel
Strand 3	D	317	322	anti-parallel
Strand 4	D	329	333	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	426	431	parallel
Strand 3	D	408	418	anti-parallel
Strand 4	D	360	370	anti-parallel
Strand 5	D	344	349	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	426	431	parallel
Strand 3	D	408	418	anti-parallel
Strand 4	D	360	370	anti-parallel
Strand 5	D	355	357	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	448	first strand
Strand 2	D	451	456	anti-parallel
Strand 3	D	466	470	anti-parallel
Strand 4	D	479	480	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	516	first strand
Strand 2	D	524	531	anti-parallel
Strand 3	D	536	543	anti-parallel
Strand 4	D	549	553	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VWP