Analysis of interatomic Contacts of Structural Units in PDB entry:
8VWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VWR entry

There are 2 chains in PDB entry 8VWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 159MET 312
B
 LYS 159MET 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 8VWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 173Right-handed alpha
Helix 2
AA2
A
188 200Right-handed alpha
Helix 3
AA3
A
203 208Right-handed alpha
Helix 4
AA4
A
208 216Right-handed alpha
Helix 5
AA5
A
224 231Right-handed alpha
Helix 6
AA6
A
232 235Right-handed 310
Helix 7
AA7
B
166 172Right-handed alpha
Helix 8
AA8
B
188 200Right-handed alpha
Helix 9
AA9
B
203 208Right-handed alpha
Helix 10
AB1
B
208 216Right-handed alpha
Helix 11
AB2
B
224 231Right-handed alpha
Helix 12
AB3
B
232 235Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8VWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
241 244parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
268 281anti-parallel
Strand 3
A
284 295anti-parallel
Strand 4
A
303 312anti-parallel
Strand 5
A
248 258anti-parallel
Strand 6
B
248 258anti-parallel
Strand 7
B
303 312anti-parallel
Strand 8
B
285 295anti-parallel
Strand 9
B
267 280anti-parallel
Strand 10
B
185 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
241 244parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il