Analysis of interatomic Contacts of Structural Units in PDB entry:
8VX3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VX3 entry

There are 4 chains in PDB entry 8VX3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4PRO 209
B
 GLY 4PRO 209
C
 GLY 4PRO 209
D
 GLY 3PRO 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8VX3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 46Right-handed alpha
Helix 2
AA2
A
52 56Right-handed 310
Helix 3
AA3
A
59 74Right-handed alpha
Helix 4
AA4
A
78 84Right-handed alpha
Helix 5
AA5
A
100 115Right-handed alpha
Helix 6
AA6
A
154 173Right-handed alpha
Helix 7
AA7
A
182 195Right-handed alpha
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
B
14 45Right-handed alpha
Helix 10
AB1
B
59 74Right-handed alpha
Helix 11
AB2
B
78 85Right-handed alpha
Helix 12
AB3
B
100 115Right-handed alpha
Helix 13
AB4
B
155 164Right-handed alpha
Helix 14
AB5
B
164 173Right-handed alpha
Helix 15
AB6
B
178 194Right-handed alpha
Helix 16
AB7
B
200 204Right-handed 310
Helix 17
AB8
C
14 46Right-handed alpha
Helix 18
AB9
C
59 74Right-handed alpha
Helix 19
AC1
C
78 86Right-handed alpha
Helix 20
AC2
C
100 115Right-handed alpha
Helix 21
AC3
C
155 164Right-handed alpha
Helix 22
AC4
C
168 173Right-handed alpha
Helix 23
AC5
C
178 180Right-handed 310
Helix 24
AC6
C
181 195Right-handed alpha
Helix 25
AC7
C
200 204Right-handed 310
Helix 26
AC8
D
14 46Right-handed alpha
Helix 27
AC9
D
52 56Right-handed 310
Helix 28
AD1
D
59 74Right-handed alpha
Helix 29
AD2
D
78 86Right-handed alpha
Helix 30
AD3
D
100 115Right-handed alpha
Helix 31
AD4
D
155 164Right-handed alpha
Helix 32
AD5
D
185 195Right-handed alpha
Helix 33
AD6
D
200 204Right-handed 310
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There are 8 sheets in PDB entry 8VX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
11 13anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
147 152parallel
Strand 4
A
135 140anti-parallel
Strand 5
A
118 124anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
12 13anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
90 96anti-parallel
Strand 3
B
147 154parallel
Strand 4
B
135 140anti-parallel
Strand 5
B
118 124anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
12 13anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 51first strand
Strand 2
C
90 96anti-parallel
Strand 3
C
147 154parallel
Strand 4
C
135 140anti-parallel
Strand 5
C
118 124anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
11 13anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 96first strand
Strand 2
D
147 154parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
118 124anti-parallel
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