Analysis of interatomic Contacts of Structural Units in PDB entry:
8VX4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VX4 entry

There are 4 chains in PDB entry 8VX4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 3 C 17
C
 C 19 T 32
B
 A 4 C 33
A
 GLY 12GLN 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8VX4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
89 101Right-handed alpha
Helix 3
AA3
A
106 117Right-handed alpha
Helix 4
AA4
A
117 124Right-handed alpha
Helix 5
AA5
A
136 146Right-handed alpha
Helix 6
AA6
A
151 167Right-handed alpha
Helix 7
AA7
A
183 188Right-handed alpha
Helix 8
AA8
A
191 200Right-handed alpha
Helix 9
AA9
A
203 210Right-handed alpha
Helix 10
AB1
A
212 217Right-handed alpha
Helix 11
AB2
A
220 227Right-handed alpha
Helix 12
AB3
A
228 231Right-handed 310
Helix 13
AB4
A
232 243Right-handed alpha
Helix 14
AB5
A
247 258Right-handed alpha
Helix 15
AB6
A
268 279Right-handed alpha
Helix 16
AB7
A
292 308Right-handed alpha
Helix 17
AB8
A
310 324Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8VX4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
55 59anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
177 179anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il