Analysis of interatomic Contacts of Structural Units in PDB entry:
8VX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VX8 entry

There are 3 chains in PDB entry 8VX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 62LYS 994
B
 A 1 T 27
C
 G 2 G 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8VX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 83Right-handed alpha
Helix 2
AA2
A
92 105Right-handed alpha
Helix 3
AA3
A
181 194Right-handed alpha
Helix 4
AA4
A
196 207Right-handed alpha
Helix 5
AA5
A
208 213Right-handed 310
Helix 6
AA6
A
214 225Right-handed alpha
Helix 7
AA7
A
241 254Right-handed alpha
Helix 8
AA8
A
267 282Right-handed alpha
Helix 9
AA9
A
314 324Right-handed alpha
Helix 10
AB1
A
338 341Right-handed 310
Helix 11
AB2
A
342 356Right-handed alpha
Helix 12
AB3
A
373 380Right-handed alpha
Helix 13
AB4
A
399 408Right-handed alpha
Helix 14
AB5
A
432 444Right-handed alpha
Helix 15
AB6
A
444 456Right-handed alpha
Helix 16
AB7
A
457 466Right-handed alpha
Helix 17
AB8
A
473 487Right-handed alpha
Helix 18
AB9
A
499 513Right-handed alpha
Helix 19
AC1
A
514 518Right-handed 310
Helix 20
AC2
A
530 535Right-handed 310
Helix 21
AC3
A
554 559Right-handed alpha
Helix 22
AC4
A
594 603Right-handed alpha
Helix 23
AC5
A
618 624Right-handed alpha
Helix 24
AC6
A
631 635Right-handed 310
Helix 25
AC7
A
639 648Right-handed alpha
Helix 26
AC8
A
655 659Right-handed 310
Helix 27
AC9
A
665 679Right-handed alpha
Helix 28
AD1
A
689 698Right-handed alpha
Helix 29
AD2
A
701 714Right-handed alpha
Helix 30
AD3
A
716 729Right-handed alpha
Helix 31
AD4
A
740 752Right-handed alpha
Helix 32
AD5
A
757 773Right-handed alpha
Helix 33
AD6
A
775 786Right-handed alpha
Helix 34
AD7
A
789 811Right-handed alpha
Helix 35
AD8
A
829 841Right-handed alpha
Helix 36
AD9
A
875 879Right-handed 310
Helix 37
AE1
A
908 915Right-handed alpha
Helix 38
AE2
A
941 965Right-handed alpha
Helix 39
AE3
A
977 988Right-handed alpha
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There are 6 sheets in PDB entry 8VX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
292 296anti-parallel
Strand 3
A
309 313parallel
Strand 4
A
261 265parallel
Strand 5
A
332 336parallel
Strand 6
A
363 368parallel
Strand 7
A
227 232parallel
Strand 8
A
385 388parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
611 615parallel
Strand 3
A
567 570parallel
Strand 4
A
493 496parallel
Strand 5
A
549 552parallel
Strand 6
A
523 526parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 576first strand
Strand 2
A
589 591anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 587first strand
Strand 2
A
893 895parallel
Strand 3
A
899 901anti-parallel
Strand 4
A
870 871parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 862first strand
Strand 2
A
845 851anti-parallel
Strand 3
A
887 890anti-parallel
Strand 4
A
904 906anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 921first strand
Strand 2
A
930 931anti-parallel
Strand 3
A
937 938anti-parallel
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