Analysis of interatomic Contacts of Structural Units in PDB entry:
8VX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VX9 entry

There are 2 chains in PDB entry 8VX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 259
B
 MET 1THR 1174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8VX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 6Right-handed 310
Helix 2
AA2
A
29 40Right-handed alpha
Helix 3
AA3
A
47 58Right-handed alpha
Helix 4
AA4
A
60 69Right-handed alpha
Helix 5
AA5
A
76 95Right-handed alpha
Helix 6
AA6
A
146 158Right-handed alpha
Helix 7
AA7
A
165 180Right-handed alpha
Helix 8
AA8
A
181 194Right-handed alpha
Helix 9
AA9
A
198 200Right-handed 310
Helix 10
AB1
A
214 224Right-handed alpha
Helix 11
AB2
A
240 247Right-handed alpha
Helix 12
AB3
A
248 259Right-handed alpha
Helix 13
AB4
B
4 16Right-handed alpha
Helix 14
AB5
B
23 35Right-handed alpha
Helix 15
AB6
B
50 72Right-handed alpha
Helix 16
AB7
B
76 95Right-handed alpha
Helix 17
AB8
B
103 118Right-handed alpha
Helix 18
AB9
B
120 129Right-handed alpha
Helix 19
AC1
B
130 132Right-handed 310
Helix 20
AC2
B
138 149Right-handed alpha
Helix 21
AC3
B
151 166Right-handed alpha
Helix 22
AC4
B
169 182Right-handed alpha
Helix 23
AC5
B
192 224Right-handed alpha
Helix 24
AC6
B
225 246Right-handed alpha
Helix 25
AC7
B
248 267Right-handed alpha
Helix 26
AC8
B
269 274Right-handed alpha
Helix 27
AC9
B
285 299Right-handed alpha
Helix 28
AD1
B
308 310Right-handed 310
Helix 29
AD2
B
311 318Right-handed alpha
Helix 30
AD3
B
334 349Right-handed alpha
Helix 31
AD4
B
359 375Right-handed alpha
Helix 32
AD5
B
393 398Right-handed alpha
Helix 33
AD6
B
407 418Right-handed alpha
Helix 34
AD7
B
419 423Right-handed 310
Helix 35
AD8
B
439 454Right-handed alpha
Helix 36
AD9
B
457 461Right-handed 310
Helix 37
AE1
B
472 485Right-handed alpha
Helix 38
AE2
B
553 568Right-handed alpha
Helix 39
AE3
B
578 583Right-handed alpha
Helix 40
AE4
B
583 595Right-handed alpha
Helix 41
AE5
B
605 608Right-handed 310
Helix 42
AE6
B
609 618Right-handed alpha
Helix 43
AE7
B
624 631Right-handed alpha
Helix 44
AE8
B
642 655Right-handed alpha
Helix 45
AE9
B
665 670Right-handed alpha
Helix 46
AF1
B
691 701Right-handed alpha
Helix 47
AF2
B
720 734Right-handed alpha
Helix 48
AF3
B
742 760Right-handed alpha
Helix 49
AF4
B
762 773Right-handed alpha
Helix 50
AF5
B
786 813Right-handed alpha
Helix 51
AF6
B
821 830Right-handed alpha
Helix 52
AF7
B
833 842Right-handed alpha
Helix 53
AF8
B
844 866Right-handed alpha
Helix 54
AF9
B
867 878Right-handed alpha
Helix 55
AG1
B
881 889Right-handed alpha
Helix 56
AG2
B
890 904Right-handed alpha
Helix 57
AG3
B
912 923Right-handed alpha
Helix 58
AG4
B
938 948Right-handed alpha
Helix 59
AG5
B
958 969Right-handed alpha
Helix 60
AG6
B
974 989Right-handed alpha
Helix 61
AG7
B
1006 1011Right-handed alpha
Helix 62
AG8
B
1020 1028Right-handed alpha
Helix 63
AG9
B
1031 1043Right-handed alpha
Helix 64
AH1
B
1048 1056Right-handed alpha
Helix 65
AH2
B
1059 1065Right-handed alpha
Helix 66
AH3
B
1078 1085Right-handed alpha
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There are 7 sheets in PDB entry 8VX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
234 237parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 125first strand
Strand 2
A
132 142anti-parallel
Strand 3
A
202 210parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
403 406parallel
Strand 3
B
352 356parallel
Strand 4
B
425 431parallel
Strand 5
B
462 467parallel
Strand 6
B
325 328parallel
Strand 7
B
492 493parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
522 531first strand
Strand 2
B
512 519anti-parallel
Strand 3
B
500 508anti-parallel
Strand 4
B
710 717parallel
Strand 5
B
677 679parallel
Strand 6
B
572 575parallel
Strand 7
B
660 663parallel
Strand 8
B
634 637parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
684 685first strand
Strand 2
B
688 689anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1095 1096first strand
Strand 2
B
1160 1167anti-parallel
Strand 3
B
1099 1102anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1095 1096first strand
Strand 2
B
1160 1167anti-parallel
Strand 3
B
1149 1154anti-parallel
Strand 4
B
1115 1121anti-parallel
Strand 5
B
1124 1128anti-parallel
Strand 6
B
1134 1138anti-parallel
Strand 7
B
1104 1105anti-parallel
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