Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VXA entry

There are 3 chains in PDB entry 8VXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 2 A 15
C
 G 1 A 10
A
 MET 1THR 1174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8VXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
23 33Right-handed alpha
Helix 3
AA3
A
50 72Right-handed alpha
Helix 4
AA4
A
75 95Right-handed alpha
Helix 5
AA5
A
103 118Right-handed alpha
Helix 6
AA6
A
120 129Right-handed alpha
Helix 7
AA7
A
138 150Right-handed alpha
Helix 8
AA8
A
151 166Right-handed alpha
Helix 9
AA9
A
204 224Right-handed alpha
Helix 10
AB1
A
225 247Right-handed alpha
Helix 11
AB2
A
248 267Right-handed alpha
Helix 12
AB3
A
269 274Right-handed alpha
Helix 13
AB4
A
285 299Right-handed alpha
Helix 14
AB5
A
311 319Right-handed alpha
Helix 15
AB6
A
334 348Right-handed alpha
Helix 16
AB7
A
359 375Right-handed alpha
Helix 17
AB8
A
392 401Right-handed alpha
Helix 18
AB9
A
407 418Right-handed alpha
Helix 19
AC1
A
419 423Right-handed 310
Helix 20
AC2
A
439 454Right-handed alpha
Helix 21
AC3
A
457 461Right-handed 310
Helix 22
AC4
A
475 483Right-handed alpha
Helix 23
AC5
A
553 567Right-handed alpha
Helix 24
AC6
A
578 580Right-handed 310
Helix 25
AC7
A
581 595Right-handed alpha
Helix 26
AC8
A
605 608Right-handed 310
Helix 27
AC9
A
609 618Right-handed alpha
Helix 28
AD1
A
624 632Right-handed alpha
Helix 29
AD2
A
642 655Right-handed alpha
Helix 30
AD3
A
665 668Right-handed 310
Helix 31
AD4
A
691 700Right-handed alpha
Helix 32
AD5
A
720 733Right-handed alpha
Helix 33
AD6
A
742 760Right-handed alpha
Helix 34
AD7
A
762 773Right-handed alpha
Helix 35
AD8
A
786 813Right-handed alpha
Helix 36
AD9
A
818 820Right-handed 310
Helix 37
AE1
A
821 830Right-handed alpha
Helix 38
AE2
A
833 840Right-handed alpha
Helix 39
AE3
A
844 865Right-handed alpha
Helix 40
AE4
A
867 878Right-handed alpha
Helix 41
AE5
A
880 890Right-handed alpha
Helix 42
AE6
A
890 907Right-handed alpha
Helix 43
AE7
A
911 925Right-handed alpha
Helix 44
AE8
A
938 949Right-handed alpha
Helix 45
AE9
A
951 955Right-handed 310
Helix 46
AF1
A
959 971Right-handed alpha
Helix 47
AF2
A
973 990Right-handed alpha
Helix 48
AF3
A
993 1002Right-handed alpha
Helix 49
AF4
A
1007 1015Right-handed alpha
Helix 50
AF5
A
1018 1028Right-handed alpha
Helix 51
AF6
A
1031 1043Right-handed alpha
Helix 52
AF7
A
1048 1058Right-handed alpha
Helix 53
AF8
A
1058 1067Right-handed alpha
Helix 54
AF9
A
1075 1086Right-handed alpha
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There are 3 sheets in PDB entry 8VXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
403 406parallel
Strand 3
A
353 356parallel
Strand 4
A
428 431parallel
Strand 5
A
463 467parallel
Strand 6
A
325 328parallel
Strand 7
A
492 493parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 531first strand
Strand 2
A
512 517anti-parallel
Strand 3
A
500 508anti-parallel
Strand 4
A
710 717parallel
Strand 5
A
677 680parallel
Strand 6
A
572 575parallel
Strand 7
A
660 663parallel
Strand 8
A
634 637parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1097 1102first strand
Strand 2
A
1160 1165anti-parallel
Strand 3
A
1150 1154anti-parallel
Strand 4
A
1115 1121anti-parallel
Strand 5
A
1124 1128anti-parallel
Strand 6
A
1134 1138anti-parallel
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