Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VXC entry

There are 3 chains in PDB entry 8VXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 C 9
A
 MET 1THR 1174
B
 G 3 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8VXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed alpha
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
23 33Right-handed alpha
Helix 4
AA4
A
50 72Right-handed alpha
Helix 5
AA5
A
75 95Right-handed alpha
Helix 6
AA6
A
102 118Right-handed alpha
Helix 7
AA7
A
120 129Right-handed alpha
Helix 8
AA8
A
138 149Right-handed alpha
Helix 9
AA9
A
151 166Right-handed alpha
Helix 10
AB1
A
204 224Right-handed alpha
Helix 11
AB2
A
225 247Right-handed alpha
Helix 12
AB3
A
248 268Right-handed alpha
Helix 13
AB4
A
269 274Right-handed alpha
Helix 14
AB5
A
285 299Right-handed alpha
Helix 15
AB6
A
311 318Right-handed alpha
Helix 16
AB7
A
330 333Right-handed 310
Helix 17
AB8
A
334 349Right-handed alpha
Helix 18
AB9
A
359 375Right-handed alpha
Helix 19
AC1
A
393 400Right-handed alpha
Helix 20
AC2
A
407 418Right-handed alpha
Helix 21
AC3
A
419 423Right-handed 310
Helix 22
AC4
A
439 453Right-handed alpha
Helix 23
AC5
A
454 461Right-handed 310
Helix 24
AC6
A
473 485Right-handed alpha
Helix 25
AC7
A
553 568Right-handed alpha
Helix 26
AC8
A
578 596Right-handed alpha
Helix 27
AC9
A
606 609Right-handed 310
Helix 28
AD1
A
610 617Right-handed alpha
Helix 29
AD2
A
624 633Right-handed alpha
Helix 30
AD3
A
642 655Right-handed alpha
Helix 31
AD4
A
691 701Right-handed alpha
Helix 32
AD5
A
720 734Right-handed alpha
Helix 33
AD6
A
742 760Right-handed alpha
Helix 34
AD7
A
762 773Right-handed alpha
Helix 35
AD8
A
788 813Right-handed alpha
Helix 36
AD9
A
821 830Right-handed alpha
Helix 37
AE1
A
833 840Right-handed alpha
Helix 38
AE2
A
844 865Right-handed alpha
Helix 39
AE3
A
867 878Right-handed alpha
Helix 40
AE4
A
880 907Right-handed alpha
Helix 41
AE5
A
911 925Right-handed alpha
Helix 42
AE6
A
938 948Right-handed alpha
Helix 43
AE7
A
961 970Right-handed alpha
Helix 44
AE8
A
973 990Right-handed alpha
Helix 45
AE9
A
999 1003Right-handed 310
Helix 46
AF1
A
1007 1015Right-handed alpha
Helix 47
AF2
A
1018 1028Right-handed alpha
Helix 48
AF3
A
1031 1042Right-handed alpha
Helix 49
AF4
A
1048 1056Right-handed alpha
Helix 50
AF5
A
1058 1063Right-handed alpha
Helix 51
AF6
A
1072 1079Right-handed alpha
Helix 52
AF7
A
1080 1085Right-handed alpha
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There are 3 sheets in PDB entry 8VXC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
403 406parallel
Strand 3
A
352 356parallel
Strand 4
A
425 431parallel
Strand 5
A
462 467parallel
Strand 6
A
325 328parallel
Strand 7
A
492 493parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 531first strand
Strand 2
A
512 515anti-parallel
Strand 3
A
500 509anti-parallel
Strand 4
A
710 717parallel
Strand 5
A
677 680parallel
Strand 6
A
572 575parallel
Strand 7
A
660 663parallel
Strand 8
A
634 637parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1100first strand
Strand 2
A
1161 1167anti-parallel
Strand 3
A
1149 1154anti-parallel
Strand 4
A
1115 1121anti-parallel
Strand 5
A
1124 1128anti-parallel
Strand 6
A
1134 1136anti-parallel
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