Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VXG entry

There is 1 chain in PDB entry 8VXG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8PHE 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8VXG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed 310
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
57 66Right-handed alpha
Helix 4
AA4
A
88 92Right-handed alpha
Helix 5
AA5
A
96 100Right-handed 310
Helix 6
AA6
A
103 113Right-handed alpha
Helix 7
AA7
A
114 116Right-handed 310
Helix 8
AA8
A
117 123Right-handed alpha
Helix 9
AA9
A
124 143Right-handed alpha
Helix 10
AB1
A
147 151Right-handed alpha
Helix 11
AB2
A
153 165Right-handed alpha
Helix 12
AB3
A
167 169Right-handed 310
Helix 13
AB4
A
170 183Right-handed alpha
Helix 14
AB5
A
194 217Right-handed alpha
Helix 15
AB6
A
221 229Right-handed alpha
Helix 16
AB7
A
237 255Right-handed alpha
Helix 17
AB8
A
255 270Right-handed alpha
Helix 18
AB9
A
270 280Right-handed alpha
Helix 19
AC1
A
283 296Right-handed alpha
Helix 20
AC2
A
326 330Right-handed alpha
Helix 21
AC3
A
365 384Right-handed alpha
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There are 4 sheets in PDB entry 8VXG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
321 325parallel
Strand 4
A
300 305anti-parallel
Strand 5
A
71 72anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
408 410anti-parallel
Strand 3
A
388 389anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
314 316anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
404 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il