Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VXK entry

There are 2 chains in PDB entry 8VXK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 107HIS 471
B
 SER 107HIS 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8VXK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 122Right-handed 310
Helix 2
AA2
A
123 139Right-handed alpha
Helix 3
AA3
A
140 144Right-handed 310
Helix 4
AA4
A
151 167Right-handed alpha
Helix 5
AA5
A
171 173Right-handed 310
Helix 6
AA6
A
180 192Right-handed alpha
Helix 7
AA7
A
205 215Right-handed alpha
Helix 8
AA8
A
230 238Right-handed alpha
Helix 9
AA9
A
257 271Right-handed alpha
Helix 10
AB1
A
294 299Right-handed alpha
Helix 11
AB2
A
315 319Right-handed 310
Helix 12
AB3
A
326 335Right-handed alpha
Helix 13
AB4
A
344 357Right-handed alpha
Helix 14
AB5
A
358 387Right-handed alpha
Helix 15
AB6
A
410 421Right-handed alpha
Helix 16
AB7
A
429 432Right-handed 310
Helix 17
AB8
A
453 455Right-handed 310
Helix 18
AB9
A
456 469Right-handed alpha
Helix 19
AC1
B
123 139Right-handed alpha
Helix 20
AC2
B
140 142Right-handed 310
Helix 21
AC3
B
151 167Right-handed alpha
Helix 22
AC4
B
171 173Right-handed 310
Helix 23
AC5
B
180 192Right-handed alpha
Helix 24
AC6
B
205 215Right-handed alpha
Helix 25
AC7
B
230 238Right-handed alpha
Helix 26
AC8
B
257 271Right-handed alpha
Helix 27
AC9
B
295 299Right-handed 310
Helix 28
AD1
B
326 337Right-handed alpha
Helix 29
AD2
B
344 357Right-handed alpha
Helix 30
AD3
B
358 387Right-handed alpha
Helix 31
AD4
B
410 420Right-handed alpha
Helix 32
AD5
B
429 432Right-handed 310
Helix 33
AD6
B
453 455Right-handed 310
Helix 34
AD7
B
456 469Right-handed alpha
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There are 6 sheets in PDB entry 8VXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
423 424parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
321 324anti-parallel
Strand 3
A
304 309anti-parallel
Strand 4
A
275 279parallel
Strand 5
A
241 244parallel
Strand 6
A
197 202parallel
Strand 7
A
218 225parallel
Strand 8
A
228 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
400 404anti-parallel
Strand 3
A
444 448anti-parallel
Strand 4
A
426 427anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
423 424parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
321 324anti-parallel
Strand 3
B
304 309anti-parallel
Strand 4
B
275 280parallel
Strand 5
B
241 244parallel
Strand 6
B
198 202parallel
Strand 7
B
219 225parallel
Strand 8
B
228 229anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 393first strand
Strand 2
B
400 404anti-parallel
Strand 3
B
445 448anti-parallel
Strand 4
B
426 427anti-parallel
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