Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VXM entry

There is 1 chain in PDB entry 8VXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -362ARG 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 8VXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-347 -331Right-handed alpha
Helix 2
AA2
A
-321 -311Right-handed alpha
Helix 3
AA3
A
-297 -290Right-handed alpha
Helix 4
AA4
A
-281 -276Right-handed alpha
Helix 5
AA5
A
-273 -266Right-handed alpha
Helix 6
AA6
A
-232 -222Right-handed alpha
Helix 7
AA7
A
-210 -201Right-handed alpha
Helix 8
AA8
A
-178 -162Right-handed alpha
Helix 9
AA9
A
-154 -145Right-handed alpha
Helix 10
AB1
A
-135 -133Right-handed 310
Helix 11
AB2
A
-132 -125Right-handed alpha
Helix 12
AB3
A
-91 -80Right-handed alpha
Helix 13
AB4
A
-77 -66Right-handed alpha
Helix 14
AB5
A
-59 -51Right-handed alpha
Helix 15
AB6
A
-49 -36Right-handed alpha
Helix 16
AB7
A
-28 -11Right-handed alpha
Helix 17
AB8
A
-7 26Right-handed alpha
Helix 18
AB9
A
91 108Right-handed alpha
Helix 19
AC1
A
108 119Right-handed alpha
Helix 20
AC2
A
125 139Right-handed alpha
Helix 21
AC3
A
143 164Right-handed alpha
Helix 22
AC4
A
167 184Right-handed alpha
Helix 23
AC5
A
184 192Right-handed alpha
Helix 24
AC6
A
193 203Right-handed alpha
Helix 25
AC7
A
204 206Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 8VXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-329 -325first strand
Strand 2
A
-357 -353parallel
Strand 3
A
-304 -300parallel
Strand 4
A
-105 -97anti-parallel
Strand 5
A
-257 -252anti-parallel
Strand 6
A
-62 -61anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-329 -325first strand
Strand 2
A
-357 -353parallel
Strand 3
A
-304 -300parallel
Strand 4
A
-105 -97anti-parallel
Strand 5
A
-35 -34parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-265 -264first strand
Strand 2
A
-261 -260anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-218 -216first strand
Strand 2
A
-141 -136parallel
Strand 3
A
-249 -245anti-parallel
Strand 4
A
-121 -118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-196 -191first strand
Strand 2
A
-188 -181anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il