Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VXQ entry

There are 18 chains in PDB entry 8VXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLY 25	GLU 331
J	GLY 25	GLU 331
K	GLY 25	GLU 331
L	GLY 25	GLU 331
M	GLY 25	GLU 331
N	GLY 25	GLU 331
O	GLY 25	GLU 331
P	GLY 25	GLU 331
Q	GLY 25	GLU 331
A	MET 1	ARG 155
B	MET 1	ARG 155
C	MET 1	ARG 155
D	MET 1	ARG 155
E	MET 1	ARG 155
F	MET 1	ARG 155
G	MET 1	ARG 155
H	MET 1	ARG 155
I	MET 1	ARG 155

There are120 helices in PDB entry 8VXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	28	68	Right-handed alpha
Helix 2	AA2	R	70	76	Right-handed alpha
Helix 3	AA3	R	78	88	Right-handed alpha
Helix 4	AA4	R	102	141	Right-handed alpha
Helix 5	AA5	R	150	155	Right-handed alpha
Helix 6	AA6	R	162	259	Right-handed alpha
Helix 7	AA7	R	280	291	Right-handed alpha
Helix 8	AA8	R	295	305	Right-handed alpha
Helix 9	AA9	R	313	331	Right-handed alpha
Helix 10	AB1	J	28	68	Right-handed alpha
Helix 11	AB2	J	70	76	Right-handed alpha
Helix 12	AB3	J	78	90	Right-handed alpha
Helix 13	AB4	J	101	141	Right-handed alpha
Helix 14	AB5	J	147	155	Right-handed alpha
Helix 15	AB6	J	162	259	Right-handed alpha
Helix 16	AB7	J	280	287	Right-handed alpha
Helix 17	AB8	J	295	305	Right-handed alpha
Helix 18	AB9	J	316	331	Right-handed alpha
Helix 19	AC1	K	28	68	Right-handed alpha
Helix 20	AC2	K	70	76	Right-handed alpha
Helix 21	AC3	K	78	90	Right-handed alpha
Helix 22	AC4	K	101	141	Right-handed alpha
Helix 23	AC5	K	147	155	Right-handed alpha
Helix 24	AC6	K	162	259	Right-handed alpha
Helix 25	AC7	K	280	287	Right-handed alpha
Helix 26	AC8	K	295	305	Right-handed alpha
Helix 27	AC9	K	313	331	Right-handed alpha
Helix 28	AD1	L	28	68	Right-handed alpha
Helix 29	AD2	L	70	76	Right-handed alpha
Helix 30	AD3	L	78	86	Right-handed alpha
Helix 31	AD4	L	101	141	Right-handed alpha
Helix 32	AD5	L	147	155	Right-handed alpha
Helix 33	AD6	L	162	259	Right-handed alpha
Helix 34	AD7	L	280	287	Right-handed alpha
Helix 35	AD8	L	295	305	Right-handed alpha
Helix 36	AD9	L	316	331	Right-handed alpha
Helix 37	AE1	M	28	68	Right-handed alpha
Helix 38	AE2	M	70	76	Right-handed alpha
Helix 39	AE3	M	78	90	Right-handed alpha
Helix 40	AE4	M	102	129	Right-handed alpha
Helix 41	AE5	M	129	141	Right-handed alpha
Helix 42	AE6	M	145	155	Right-handed alpha
Helix 43	AE7	M	162	259	Right-handed alpha
Helix 44	AE8	M	280	287	Right-handed alpha
Helix 45	AE9	M	295	305	Right-handed alpha
Helix 46	AF1	M	316	331	Right-handed alpha
Helix 47	AF2	N	27	68	Right-handed alpha
Helix 48	AF3	N	70	76	Right-handed alpha
Helix 49	AF4	N	78	86	Right-handed alpha
Helix 50	AF5	N	102	141	Right-handed alpha
Helix 51	AF6	N	162	259	Right-handed alpha
Helix 52	AF7	N	280	291	Right-handed alpha
Helix 53	AF8	N	295	305	Right-handed alpha
Helix 54	AF9	N	316	331	Right-handed alpha
Helix 55	AG1	O	28	68	Right-handed alpha
Helix 56	AG2	O	70	76	Right-handed alpha
Helix 57	AG3	O	78	90	Right-handed alpha
Helix 58	AG4	O	101	141	Right-handed alpha
Helix 59	AG5	O	162	259	Right-handed alpha
Helix 60	AG6	O	280	291	Right-handed alpha
Helix 61	AG7	O	295	305	Right-handed alpha
Helix 62	AG8	O	316	331	Right-handed alpha
Helix 63	AG9	P	28	68	Right-handed alpha
Helix 64	AH1	P	70	76	Right-handed alpha
Helix 65	AH2	P	78	86	Right-handed alpha
Helix 66	AH3	P	102	141	Right-handed alpha
Helix 67	AH4	P	145	150	Right-handed alpha
Helix 68	AH5	P	150	155	Right-handed alpha
Helix 69	AH6	P	162	259	Right-handed alpha
Helix 70	AH7	P	280	291	Right-handed alpha
Helix 71	AH8	P	295	305	Right-handed alpha
Helix 72	AH9	P	316	331	Right-handed alpha
Helix 73	AI1	Q	28	68	Right-handed alpha
Helix 74	AI2	Q	70	76	Right-handed alpha
Helix 75	AI3	Q	78	87	Right-handed alpha
Helix 76	AI4	Q	101	141	Right-handed alpha
Helix 77	AI5	Q	150	155	Right-handed alpha
Helix 78	AI6	Q	162	259	Right-handed alpha
Helix 79	AI7	Q	280	291	Right-handed alpha
Helix 80	AI8	Q	295	305	Right-handed alpha
Helix 81	AI9	Q	316	331	Right-handed alpha
Helix 82	AJ1	A	7	15	Right-handed alpha
Helix 83	AJ2	A	59	65	Right-handed alpha
Helix 84	AJ3	A	77	138	Right-handed alpha
Helix 85	AJ4	A	144	152	Right-handed alpha
Helix 86	AJ5	B	7	15	Right-handed alpha
Helix 87	AJ6	B	59	65	Right-handed alpha
Helix 88	AJ7	B	77	138	Right-handed alpha
Helix 89	AJ8	B	144	152	Right-handed alpha
Helix 90	AJ9	C	6	15	Right-handed alpha
Helix 91	AK1	C	59	64	Right-handed alpha
Helix 92	AK2	C	77	138	Right-handed alpha
Helix 93	AK3	C	144	152	Right-handed alpha
Helix 94	AK4	D	6	15	Right-handed alpha
Helix 95	AK5	D	51	56	Right-handed alpha
Helix 96	AK6	D	59	65	Right-handed alpha
Helix 97	AK7	D	77	138	Right-handed alpha
Helix 98	AK8	D	144	152	Right-handed alpha
Helix 99	AK9	E	6	15	Right-handed alpha
Helix 100	AL1	E	59	65	Right-handed alpha
Helix 101	AL2	E	77	138	Right-handed alpha
Helix 102	AL3	E	144	152	Right-handed alpha
Helix 103	AL4	F	7	15	Right-handed alpha
Helix 104	AL5	F	59	65	Right-handed alpha
Helix 105	AL6	F	77	138	Right-handed alpha
Helix 106	AL7	F	144	152	Right-handed alpha
Helix 107	AL8	G	7	15	Right-handed alpha
Helix 108	AL9	G	59	65	Right-handed alpha
Helix 109	AM1	G	77	138	Right-handed alpha
Helix 110	AM2	G	144	152	Right-handed alpha
Helix 111	AM3	H	6	15	Right-handed alpha
Helix 112	AM4	H	44	49	Right-handed alpha
Helix 113	AM5	H	51	56	Right-handed alpha
Helix 114	AM6	H	59	65	Right-handed alpha
Helix 115	AM7	H	77	138	Right-handed alpha
Helix 116	AM8	H	144	150	Right-handed alpha
Helix 117	AM9	I	6	15	Right-handed alpha
Helix 118	AN1	I	59	64	Right-handed alpha
Helix 119	AN2	I	77	138	Right-handed alpha
Helix 120	AN3	I	144	152	Right-handed alpha

There are 9 sheets in PDB entry 8VXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	73	74	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	73	74	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	73	74	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	73	74	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	E	73	74	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	67	first strand
Strand 2	F	73	74	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	67	first strand
Strand 2	G	73	74	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	67	first strand
Strand 2	H	73	74	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	67	first strand
Strand 2	I	73	74	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXQ