Analysis of interatomic Contacts of Structural Units in PDB entry:
8VXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VXY entry

There are 4 chains in PDB entry 8VXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 1 T 31
D
 A 1 A 31
A
 MET 1ILE 245
B
 MET 1THR 1174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8VXY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 38Right-handed alpha
Helix 2
AA2
A
39 41Right-handed 310
Helix 3
AA3
A
47 57Right-handed alpha
Helix 4
AA4
A
60 70Right-handed alpha
Helix 5
AA5
A
76 95Right-handed alpha
Helix 6
AA6
A
146 159Right-handed alpha
Helix 7
AA7
A
160 163Right-handed 310
Helix 8
AA8
A
165 180Right-handed alpha
Helix 9
AA9
A
181 194Right-handed alpha
Helix 10
AB1
A
198 200Right-handed 310
Helix 11
AB2
A
213 224Right-handed alpha
Helix 12
AB3
A
240 245Right-handed alpha
Helix 13
AB4
B
4 16Right-handed alpha
Helix 14
AB5
B
23 34Right-handed alpha
Helix 15
AB6
B
50 72Right-handed alpha
Helix 16
AB7
B
77 95Right-handed alpha
Helix 17
AB8
B
103 118Right-handed alpha
Helix 18
AB9
B
120 129Right-handed alpha
Helix 19
AC1
B
138 149Right-handed alpha
Helix 20
AC2
B
151 166Right-handed alpha
Helix 21
AC3
B
169 182Right-handed alpha
Helix 22
AC4
B
194 224Right-handed alpha
Helix 23
AC5
B
225 247Right-handed alpha
Helix 24
AC6
B
248 269Right-handed alpha
Helix 25
AC7
B
269 274Right-handed alpha
Helix 26
AC8
B
285 299Right-handed alpha
Helix 27
AC9
B
308 319Right-handed alpha
Helix 28
AD1
B
335 349Right-handed alpha
Helix 29
AD2
B
359 375Right-handed alpha
Helix 30
AD3
B
393 401Right-handed alpha
Helix 31
AD4
B
407 418Right-handed alpha
Helix 32
AD5
B
419 423Right-handed 310
Helix 33
AD6
B
439 455Right-handed alpha
Helix 34
AD7
B
457 461Right-handed 310
Helix 35
AD8
B
473 484Right-handed alpha
Helix 36
AD9
B
553 568Right-handed alpha
Helix 37
AE1
B
578 582Right-handed 310
Helix 38
AE2
B
583 596Right-handed alpha
Helix 39
AE3
B
605 608Right-handed 310
Helix 40
AE4
B
609 618Right-handed alpha
Helix 41
AE5
B
624 631Right-handed alpha
Helix 42
AE6
B
642 655Right-handed alpha
Helix 43
AE7
B
666 671Right-handed alpha
Helix 44
AE8
B
691 702Right-handed alpha
Helix 45
AE9
B
720 733Right-handed alpha
Helix 46
AF1
B
742 759Right-handed alpha
Helix 47
AF2
B
765 772Right-handed alpha
Helix 48
AF3
B
786 812Right-handed alpha
Helix 49
AF4
B
821 830Right-handed alpha
Helix 50
AF5
B
833 842Right-handed alpha
Helix 51
AF6
B
844 866Right-handed alpha
Helix 52
AF7
B
867 878Right-handed alpha
Helix 53
AF8
B
880 890Right-handed alpha
Helix 54
AF9
B
890 903Right-handed alpha
Helix 55
AG1
B
909 925Right-handed alpha
Helix 56
AG2
B
927 931Right-handed 310
Helix 57
AG3
B
937 942Right-handed alpha
Helix 58
AG4
B
942 948Right-handed alpha
Helix 59
AG5
B
961 966Right-handed alpha
Helix 60
AG6
B
966 971Right-handed alpha
Helix 61
AG7
B
974 990Right-handed alpha
Helix 62
AG8
B
1003 1006Right-handed 310
Helix 63
AG9
B
1007 1013Right-handed alpha
Helix 64
AH1
B
1021 1028Right-handed alpha
Helix 65
AH2
B
1033 1040Right-handed alpha
Helix 66
AH3
B
1050 1056Right-handed alpha
Helix 67
AH4
B
1059 1067Right-handed alpha
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There are 6 sheets in PDB entry 8VXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
234 238parallel
Strand 4
A
202 210parallel
Strand 5
A
131 138parallel
Strand 6
A
120 126anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
403 406parallel
Strand 3
B
353 356parallel
Strand 4
B
427 430parallel
Strand 5
B
462 467parallel
Strand 6
B
326 328parallel
Strand 7
B
492 493parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 531first strand
Strand 2
B
512 517anti-parallel
Strand 3
B
503 508anti-parallel
Strand 4
B
712 717parallel
Strand 5
B
677 679parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
572 573first strand
Strand 2
B
660 661parallel
Strand 3
B
634 635parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1095 1096first strand
Strand 2
B
1166 1167anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1099 1102first strand
Strand 2
B
1160 1163anti-parallel
Strand 3
B
1152 1154anti-parallel
Strand 4
B
1115 1121anti-parallel
Strand 5
B
1124 1128anti-parallel
Strand 6
B
1134 1138anti-parallel
Strand 7
B
1104 1105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il