Analysis of interatomic Contacts of Structural Units in PDB entry:
8VY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VY2 entry

There is 1 chain in PDB entry 8VY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1113	MET 2470

There are 27 helices in PDB entry 8VY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1179	1182	Right-handed 310
Helix 2	AA2	A	1214	1220	Right-handed alpha
Helix 3	AA3	A	1238	1251	Right-handed alpha
Helix 4	AA4	A	1253	1257	Right-handed 310
Helix 5	AA5	A	1291	1302	Right-handed alpha
Helix 6	AA6	A	1302	1311	Right-handed alpha
Helix 7	AA7	A	1320	1325	Right-handed 310
Helix 8	AA8	A	1380	1385	Right-handed 310
Helix 9	AA9	A	1387	1391	Right-handed 310
Helix 10	AB1	A	1578	1590	Right-handed alpha
Helix 11	AB2	A	1661	1665	Right-handed 310
Helix 12	AB3	A	1759	1762	Right-handed 310
Helix 13	AB4	A	1889	1893	Right-handed 310
Helix 14	AB5	A	1925	1929	Right-handed 310
Helix 15	AB6	A	1984	1987	Right-handed 310
Helix 16	AB7	A	2074	2078	Right-handed 310
Helix 17	AB8	A	2124	2135	Right-handed alpha
Helix 18	AB9	A	2142	2158	Right-handed alpha
Helix 19	AC1	A	2164	2185	Right-handed alpha
Helix 20	AC2	A	2186	2194	Right-handed 310
Helix 21	AC3	A	2197	2210	Right-handed alpha
Helix 22	AC4	A	2211	2213	Right-handed 310
Helix 23	AC5	A	2214	2222	Right-handed alpha
Helix 24	AC6	A	2227	2250	Right-handed alpha
Helix 25	AC7	A	2271	2273	Right-handed 310
Helix 26	AC8	A	2289	2293	Right-handed 310
Helix 27	AC9	A	2361	2366	Right-handed alpha

There are 27 sheets in PDB entry 8VY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1154	1157	first strand
Strand 2	A	1187	1196	anti-parallel
Strand 3	A	1201	1212	anti-parallel
Strand 4	A	1119	1125	parallel
Strand 5	A	1351	1353	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1140	1141	first strand
Strand 2	A	1174	1177	anti-parallel
Strand 3	A	1166	1168	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1222	1227	first strand
Strand 2	A	1272	1278	anti-parallel
Strand 3	A	1258	1264	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1332	1342	first strand
Strand 2	A	1356	1365	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1370	1371	first strand
Strand 2	A	1377	1378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1393	1396	first strand
Strand 2	A	1399	1402	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1408	1409	first strand
Strand 2	A	1415	1416	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1432	1435	first strand
Strand 2	A	1441	1444	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1595	1601	first strand
Strand 2	A	1561	1574	anti-parallel
Strand 3	A	1543	1555	anti-parallel
Strand 4	A	1479	1486	anti-parallel
Strand 5	A	1634	1641	anti-parallel
Strand 6	A	1644	1645	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1595	1601	first strand
Strand 2	A	1561	1574	anti-parallel
Strand 3	A	1543	1555	anti-parallel
Strand 4	A	1479	1486	anti-parallel
Strand 5	A	1634	1641	anti-parallel
Strand 6	A	1459	1462	anti-parallel
Strand 7	A	1658	1659	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1526	1529	first strand
Strand 2	A	1515	1522	anti-parallel
Strand 3	A	1505	1512	anti-parallel
Strand 4	A	1492	1497	anti-parallel
Strand 5	A	1613	1615	anti-parallel
Strand 6	A	1468	1470	anti-parallel
Strand 7	A	1653	1654	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1678	1682	first strand
Strand 2	A	1685	1689	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1818	1824	first strand
Strand 2	A	1804	1813	anti-parallel
Strand 3	A	1790	1801	anti-parallel
Strand 4	A	1728	1735	anti-parallel
Strand 5	A	1853	1862	anti-parallel
Strand 6	A	1707	1710	anti-parallel
Strand 7	A	1882	1883	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1715	1717	first strand
Strand 2	A	1836	1838	anti-parallel
Strand 3	A	1742	1748	anti-parallel
Strand 4	A	1752	1757	anti-parallel
Strand 5	A	1764	1768	anti-parallel
Strand 6	A	1775	1778	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1902	1904	first strand
Strand 2	A	1909	1911	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1936	1938	first strand
Strand 2	A	1948	1950	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1955	1956	first strand
Strand 2	A	1962	1963	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1972	1973	first strand
Strand 2	A	1979	1980	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1989	1993	first strand
Strand 2	A	2000	2002	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2006	2007	first strand
Strand 2	A	2016	2017	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2043	2044	first strand
Strand 2	A	2050	2051	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2056	2059	first strand
Strand 2	A	2062	2065	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2088	2091	first strand
Strand 2	A	2101	2106	anti-parallel
Strand 3	A	2110	2111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2097	2098	first strand
Strand 2	A	2120	2121	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2254	2258	first strand
Strand 2	A	2261	2269	anti-parallel
Strand 3	A	2351	2359	anti-parallel
Strand 4	A	2389	2396	anti-parallel
Strand 5	A	2465	2470	anti-parallel
Strand 6	A	2384	2385	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2254	2258	first strand
Strand 2	A	2261	2269	anti-parallel
Strand 3	A	2351	2359	anti-parallel
Strand 4	A	2389	2396	anti-parallel
Strand 5	A	2465	2470	anti-parallel
Strand 6	A	2425	2429	anti-parallel
Strand 7	A	2441	2442	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2276	2278	first strand
Strand 2	A	2295	2298	anti-parallel
Strand 3	A	2409	2413	anti-parallel
Strand 4	A	2456	2460	anti-parallel
Strand 5	A	2446	2451	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VY2