Analysis of interatomic Contacts of Structural Units in PDB entry:
8VY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VY5 entry

There are 2 chains in PDB entry 8VY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 27PRO 345
B
 ALA 30LEU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8VY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 36Right-handed alpha
Helix 2
AA2
A
45 59Right-handed alpha
Helix 3
AA3
A
74 78Right-handed 310
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
119 124Right-handed alpha
Helix 7
AA7
A
135 150Right-handed alpha
Helix 8
AA8
A
215 221Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
238 254Right-handed alpha
Helix 11
AB2
A
258 260Right-handed 310
Helix 12
AB3
A
261 280Right-handed alpha
Helix 13
AB4
A
288 294Right-handed 310
Helix 14
AB5
A
299 320Right-handed alpha
Helix 15
AB6
B
31 37Right-handed alpha
Helix 16
AB7
B
45 59Right-handed alpha
Helix 17
AB8
B
74 78Right-handed 310
Helix 18
AB9
B
90 101Right-handed alpha
Helix 19
AC1
B
114 118Right-handed 310
Helix 20
AC2
B
119 124Right-handed alpha
Helix 21
AC3
B
135 149Right-handed alpha
Helix 22
AC4
B
215 221Right-handed alpha
Helix 23
AC5
B
238 254Right-handed alpha
Helix 24
AC6
B
258 260Right-handed 310
Helix 25
AC7
B
261 281Right-handed alpha
Helix 26
AC8
B
283 287Right-handed 310
Helix 27
AC9
B
288 295Right-handed 310
Helix 28
AD1
B
299 319Right-handed alpha
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There are 3 sheets in PDB entry 8VY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
62 66parallel
Strand 3
A
38 42parallel
Strand 4
A
128 131parallel
Strand 5
A
152 159parallel
Strand 6
A
162 168anti-parallel
Strand 7
A
328 332anti-parallel
Strand 8
A
337 341anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
207 212anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
62 66parallel
Strand 3
B
38 42parallel
Strand 4
B
128 131parallel
Strand 5
B
152 159parallel
Strand 6
B
162 168anti-parallel
Strand 7
B
328 332anti-parallel
Strand 8
B
337 341anti-parallel
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