Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYD entry

There are 2 chains in PDB entry 8VYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 282
B
 GLU 2GLU 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8VYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
54 63Right-handed alpha
Helix 3
AA3
A
111 124Right-handed alpha
Helix 4
AA4
A
139 147Right-handed alpha
Helix 5
AA5
A
158 168Right-handed alpha
Helix 6
AA6
A
169 175Right-handed 310
Helix 7
AA7
A
186 191Right-handed alpha
Helix 8
AA8
A
192 194Right-handed 310
Helix 9
AA9
A
208 216Right-handed 310
Helix 10
AB1
A
217 227Right-handed alpha
Helix 11
AB2
A
249 262Right-handed alpha
Helix 12
AB3
B
8 18Right-handed alpha
Helix 13
AB4
B
54 62Right-handed alpha
Helix 14
AB5
B
111 122Right-handed alpha
Helix 15
AB6
B
139 148Right-handed alpha
Helix 16
AB7
B
158 168Right-handed alpha
Helix 17
AB8
B
169 175Right-handed 310
Helix 18
AB9
B
186 194Right-handed alpha
Helix 19
AC1
B
212 216Right-handed 310
Helix 20
AC2
B
217 227Right-handed alpha
Helix 21
AC3
B
252 261Right-handed alpha
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There are 8 sheets in PDB entry 8VYD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
74 77anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
43 45anti-parallel
Strand 4
A
51 53anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
85 90anti-parallel
Strand 3
A
96 99anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
151 156parallel
Strand 3
A
130 133parallel
Strand 4
A
199 204parallel
Strand 5
A
228 237parallel
Strand 6
A
274 278anti-parallel
Strand 7
A
264 269anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
68 71anti-parallel
Strand 3
B
74 77anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 25first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
43 45anti-parallel
Strand 4
B
51 53anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
85 90anti-parallel
Strand 3
B
96 99anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 184first strand
Strand 2
B
151 156parallel
Strand 3
B
130 133parallel
Strand 4
B
199 204parallel
Strand 5
B
228 237parallel
Strand 6
B
274 278anti-parallel
Strand 7
B
264 269anti-parallel
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