Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYJ entry

There is 1 chain in PDB entry 8VYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ALA 1882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 8VYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
118 130Right-handed alpha
Helix 4
AA4
A
131 148Right-handed alpha
Helix 5
AA5
A
156 180Right-handed alpha
Helix 6
AA6
A
194 207Right-handed alpha
Helix 7
AA7
A
208 210Right-handed 310
Helix 8
AA8
A
218 222Right-handed 310
Helix 9
AA9
A
224 232Right-handed 310
Helix 10
AB1
A
233 245Right-handed alpha
Helix 11
AB2
A
252 270Right-handed alpha
Helix 12
AB3
A
310 314Right-handed 310
Helix 13
AB4
A
348 352Right-handed 310
Helix 14
AB5
A
357 371Right-handed alpha
Helix 15
AB6
A
374 386Right-handed alpha
Helix 16
AB7
A
389 401Right-handed alpha
Helix 17
AB8
A
402 433Right-handed alpha
Helix 18
AB9
A
688 695Right-handed alpha
Helix 19
AC1
A
705 714Right-handed alpha
Helix 20
AC2
A
715 736Right-handed alpha
Helix 21
AC3
A
742 771Right-handed alpha
Helix 22
AC4
A
772 777Right-handed alpha
Helix 23
AC5
A
780 798Right-handed alpha
Helix 24
AC6
A
810 820Right-handed 310
Helix 25
AC7
A
824 835Right-handed alpha
Helix 26
AC8
A
839 862Right-handed alpha
Helix 27
AC9
A
863 865Right-handed 310
Helix 28
AD1
A
883 897Right-handed alpha
Helix 29
AD2
A
899 906Right-handed alpha
Helix 30
AD3
A
914 943Right-handed alpha
Helix 31
AD4
A
1171 1175Right-handed 310
Helix 32
AD5
A
1185 1204Right-handed alpha
Helix 33
AD6
A
1204 1221Right-handed alpha
Helix 34
AD7
A
1222 1225Right-handed 310
Helix 35
AD8
A
1226 1230Right-handed 310
Helix 36
AD9
A
1235 1261Right-handed alpha
Helix 37
AE1
A
1269 1291Right-handed alpha
Helix 38
AE2
A
1298 1305Right-handed alpha
Helix 39
AE3
A
1306 1315Right-handed 310
Helix 40
AE4
A
1319 1329Right-handed alpha
Helix 41
AE5
A
1330 1356Right-handed alpha
Helix 42
AE6
A
1380 1387Right-handed alpha
Helix 43
AE7
A
1404 1417Right-handed alpha
Helix 44
AE8
A
1420 1430Right-handed alpha
Helix 45
AE9
A
1443 1445Right-handed 310
Helix 46
AF1
A
1446 1458Right-handed alpha
Helix 47
AF2
A
1459 1481Right-handed alpha
Helix 48
AF3
A
1488 1500Right-handed alpha
Helix 49
AF4
A
1514 1520Right-handed alpha
Helix 50
AF5
A
1521 1527Right-handed alpha
Helix 51
AF6
A
1527 1547Right-handed alpha
Helix 52
AF7
A
1553 1577Right-handed alpha
Helix 53
AF8
A
1592 1611Right-handed alpha
Helix 54
AF9
A
1619 1627Right-handed alpha
Helix 55
AG1
A
1628 1640Right-handed 310
Helix 56
AG2
A
1642 1676Right-handed alpha
Helix 57
AG3
A
1696 1708Right-handed alpha
Helix 58
AG4
A
1713 1718Right-handed alpha
Helix 59
AG5
A
1744 1777Right-handed alpha
Helix 60
AG6
A
1791 1802Right-handed alpha
Helix 61
AG7
A
1810 1818Right-handed alpha
Helix 62
AG8
A
1828 1834Right-handed alpha
Helix 63
AG9
A
1835 1838Right-handed 310
Helix 64
AH1
A
1850 1860Right-handed alpha
Helix 65
AH2
A
1868 1882Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8VYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
103 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
339 343anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1362 1365first strand
Strand 2
A
1393 1396anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1808 1809first strand
Strand 2
A
1847 1849anti-parallel
Strand 3
A
1842 1843anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il