Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYK entry

There is 1 chain in PDB entry 8VYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ALA 1882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8VYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
27 31Right-handed 310
Helix 3
AA3
A
118 130Right-handed alpha
Helix 4
AA4
A
131 148Right-handed alpha
Helix 5
AA5
A
156 180Right-handed alpha
Helix 6
AA6
A
197 210Right-handed alpha
Helix 7
AA7
A
220 232Right-handed 310
Helix 8
AA8
A
233 250Right-handed alpha
Helix 9
AA9
A
253 270Right-handed alpha
Helix 10
AB1
A
304 309Right-handed alpha
Helix 11
AB2
A
310 314Right-handed 310
Helix 12
AB3
A
357 371Right-handed alpha
Helix 13
AB4
A
373 386Right-handed alpha
Helix 14
AB5
A
389 402Right-handed alpha
Helix 15
AB6
A
402 433Right-handed alpha
Helix 16
AB7
A
688 693Right-handed alpha
Helix 17
AB8
A
705 714Right-handed alpha
Helix 18
AB9
A
718 734Right-handed alpha
Helix 19
AC1
A
744 767Right-handed alpha
Helix 20
AC2
A
772 776Right-handed 310
Helix 21
AC3
A
780 796Right-handed alpha
Helix 22
AC4
A
804 818Right-handed 310
Helix 23
AC5
A
824 837Right-handed alpha
Helix 24
AC6
A
839 862Right-handed alpha
Helix 25
AC7
A
865 869Right-handed 310
Helix 26
AC8
A
883 896Right-handed alpha
Helix 27
AC9
A
899 904Right-handed alpha
Helix 28
AD1
A
914 943Right-handed alpha
Helix 29
AD2
A
1171 1176Right-handed 310
Helix 30
AD3
A
1185 1187Right-handed 310
Helix 31
AD4
A
1188 1204Right-handed alpha
Helix 32
AD5
A
1204 1222Right-handed alpha
Helix 33
AD6
A
1223 1225Right-handed 310
Helix 34
AD7
A
1226 1231Right-handed 310
Helix 35
AD8
A
1233 1261Right-handed alpha
Helix 36
AD9
A
1270 1291Right-handed alpha
Helix 37
AE1
A
1296 1302Right-handed alpha
Helix 38
AE2
A
1303 1316Right-handed 310
Helix 39
AE3
A
1317 1328Right-handed alpha
Helix 40
AE4
A
1330 1357Right-handed alpha
Helix 41
AE5
A
1380 1387Right-handed alpha
Helix 42
AE6
A
1404 1418Right-handed alpha
Helix 43
AE7
A
1420 1430Right-handed alpha
Helix 44
AE8
A
1443 1445Right-handed 310
Helix 45
AE9
A
1446 1481Right-handed alpha
Helix 46
AF1
A
1488 1498Right-handed alpha
Helix 47
AF2
A
1517 1527Right-handed alpha
Helix 48
AF3
A
1528 1545Right-handed alpha
Helix 49
AF4
A
1553 1578Right-handed alpha
Helix 50
AF5
A
1592 1607Right-handed alpha
Helix 51
AF6
A
1607 1612Right-handed alpha
Helix 52
AF7
A
1620 1627Right-handed alpha
Helix 53
AF8
A
1628 1631Right-handed 310
Helix 54
AF9
A
1633 1638Right-handed 310
Helix 55
AG1
A
1644 1654Right-handed alpha
Helix 56
AG2
A
1654 1676Right-handed alpha
Helix 57
AG3
A
1696 1708Right-handed alpha
Helix 58
AG4
A
1713 1718Right-handed alpha
Helix 59
AG5
A
1719 1721Right-handed 310
Helix 60
AG6
A
1744 1776Right-handed alpha
Helix 61
AG7
A
1790 1802Right-handed alpha
Helix 62
AG8
A
1810 1818Right-handed alpha
Helix 63
AG9
A
1819 1821Right-handed 310
Helix 64
AH1
A
1831 1836Right-handed alpha
Helix 65
AH2
A
1853 1860Right-handed alpha
Helix 66
AH3
A
1866 1882Right-handed alpha
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There are 5 sheets in PDB entry 8VYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
102 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
339 343anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1361 1365first strand
Strand 2
A
1393 1397anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1808 1809first strand
Strand 2
A
1848 1849anti-parallel
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