Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VYM entry

There are 11 chains in PDB entry 8VYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 103	LYS 695
B	ILE 103	ARG 693
C	ILE 103	ARG 693
D	GLN 1	VAL 111
E	SER 2	VAL 106
F	SER 2	VAL 106
G	GLN 1	VAL 111
H	GLN 1	VAL 106
I	SER 2	VAL 106
J	GLN 1	VAL 111
K	GLN 1	SER 113

There are 30 helices in PDB entry 8VYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	172	183	Right-handed alpha
Helix 2	AA2	A	293	295	Right-handed 310
Helix 3	AA3	A	386	390	Right-handed 310
Helix 4	AA4	A	392	407	Right-handed alpha
Helix 5	AA5	A	479	524	Right-handed alpha
Helix 6	AA6	A	524	534	Right-handed alpha
Helix 7	AA7	A	668	675	Right-handed alpha
Helix 8	AA8	A	679	694	Right-handed alpha
Helix 9	AA9	B	172	183	Right-handed alpha
Helix 10	AB1	B	338	342	Right-handed 310
Helix 11	AB2	B	392	408	Right-handed alpha
Helix 12	AB3	B	479	522	Right-handed alpha
Helix 13	AB4	B	524	534	Right-handed alpha
Helix 14	AB5	B	668	674	Right-handed alpha
Helix 15	AB6	B	679	692	Right-handed alpha
Helix 16	AB7	C	172	183	Right-handed alpha
Helix 17	AB8	C	284	288	Right-handed 310
Helix 18	AB9	C	338	343	Right-handed alpha
Helix 19	AC1	C	386	390	Right-handed 310
Helix 20	AC2	C	392	405	Right-handed alpha
Helix 21	AC3	C	479	522	Right-handed alpha
Helix 22	AC4	C	524	534	Right-handed alpha
Helix 23	AC5	C	668	675	Right-handed alpha
Helix 24	AC6	C	679	692	Right-handed alpha
Helix 25	AC7	D	83	87	Right-handed 310
Helix 26	AC8	F	79	83	Right-handed 310
Helix 27	AC9	G	83	87	Right-handed 310
Helix 28	AD1	H	27	30	Right-handed 310
Helix 29	AD2	H	79	83	Right-handed 310
Helix 30	AD3	J	83	87	Right-handed 310

There are 45 sheets in PDB entry 8VYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	352	first strand
Strand 2	A	124	131	anti-parallel
Strand 3	A	428	436	anti-parallel
Strand 4	A	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	352	first strand
Strand 2	A	124	131	anti-parallel
Strand 3	A	428	436	anti-parallel
Strand 4	A	419	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	169	first strand
Strand 2	A	136	149	anti-parallel
Strand 3	A	248	259	anti-parallel
Strand 4	A	266	268	anti-parallel
Strand 5	A	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	224	227	anti-parallel
Strand 3	A	248	259	anti-parallel
Strand 4	A	136	149	anti-parallel
Strand 5	A	331	335	anti-parallel
Strand 6	A	316	326	anti-parallel
Strand 7	A	297	306	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	210	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	198	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	373	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	540	first strand
Strand 2	A	547	548	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	378	first strand
Strand 2	B	363	368	anti-parallel
Strand 3	B	346	359	anti-parallel
Strand 4	B	121	131	anti-parallel
Strand 5	B	428	436	anti-parallel
Strand 6	B	412	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	136	147	anti-parallel
Strand 3	B	249	259	anti-parallel
Strand 4	B	266	268	anti-parallel
Strand 5	B	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	136	147	anti-parallel
Strand 3	B	331	335	anti-parallel
Strand 4	B	317	326	anti-parallel
Strand 5	B	297	305	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	211	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	541	first strand
Strand 2	B	546	547	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	377	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	346	359	anti-parallel
Strand 4	C	123	131	anti-parallel
Strand 5	C	428	436	anti-parallel
Strand 6	C	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	377	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	346	359	anti-parallel
Strand 4	C	123	131	anti-parallel
Strand 5	C	428	436	anti-parallel
Strand 6	C	419	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	169	first strand
Strand 2	C	136	149	anti-parallel
Strand 3	C	246	259	anti-parallel
Strand 4	C	266	268	anti-parallel
Strand 5	C	273	274	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	246	259	anti-parallel
Strand 3	C	136	149	anti-parallel
Strand 4	C	331	335	anti-parallel
Strand 5	C	316	326	anti-parallel
Strand 6	C	297	306	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	211	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	226	227	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	541	first strand
Strand 2	C	546	549	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	35	39	anti-parallel
Strand 4	D	88	95	anti-parallel
Strand 5	D	100	103	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	35	39	anti-parallel
Strand 4	D	88	95	anti-parallel
Strand 5	D	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	70	75	anti-parallel
Strand 3	E	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	70	75	anti-parallel
Strand 3	F	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	35	39	anti-parallel
Strand 4	G	88	95	anti-parallel
Strand 5	G	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	35	39	anti-parallel
Strand 4	G	88	95	anti-parallel
Strand 5	G	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	103	104	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	24	first strand
Strand 2	H	70	76	anti-parallel
Strand 3	H	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	48	first strand
Strand 2	H	34	38	anti-parallel
Strand 3	H	85	92	anti-parallel
Strand 4	H	95	98	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	102	105	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	102	105	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	95	98	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	35	39	anti-parallel
Strand 4	J	88	94	anti-parallel
Strand 5	J	102	103	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	35	39	anti-parallel
Strand 4	J	88	94	anti-parallel
Strand 5	J	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	98	anti-parallel
Strand 4	K	32	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	98	anti-parallel
Strand 4	K	100	103	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYM