Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYO entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8VYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 235SER 364
A
 ALA 366ALA 728
A
 GLU 730PHE 738
B
 ASP 2SER 230
C
 ASP 2THR 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8VYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
578 580Right-handed 310
Helix 5
AA5
A
597 601Right-handed 310
Helix 6
AA6
A
621 626Right-handed alpha
Helix 7
AA7
A
636 652Right-handed alpha
Helix 8
AA8
A
661 671Right-handed alpha
Helix 9
AA9
A
677 681Right-handed 310
Helix 10
AB1
A
686 697Right-handed alpha
Helix 11
AB2
A
700 704Right-handed 310
Helix 12
AB3
A
706 724Right-handed alpha
Helix 13
AB4
B
3 16Right-handed alpha
Helix 14
AB5
B
18 32Right-handed alpha
Helix 15
AB6
B
37 66Right-handed alpha
Helix 16
AB7
B
73 105Right-handed alpha
Helix 17
AB8
B
106 109Right-handed 310
Helix 18
AB9
B
111 133Right-handed alpha
Helix 19
AC1
B
140 160Right-handed alpha
Helix 20
AC2
B
164 181Right-handed alpha
Helix 21
AC3
B
184 202Right-handed alpha
Helix 22
AC4
B
209 230Right-handed alpha
Helix 23
AC5
C
3 16Right-handed alpha
Helix 24
AC6
C
18 31Right-handed alpha
Helix 25
AC7
C
37 68Right-handed alpha
Helix 26
AC8
C
74 104Right-handed alpha
Helix 27
AC9
C
113 133Right-handed alpha
Helix 28
AD1
C
134 152Right-handed alpha
Helix 29
AD2
C
164 181Right-handed alpha
Helix 30
AD3
C
184 201Right-handed alpha
Helix 31
AD4
C
205 210Right-handed alpha
Helix 32
AD5
C
210 229Right-handed alpha
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There are 3 sheets in PDB entry 8VYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
257 261anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
469 472anti-parallel
Strand 3
A
480 485anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 519anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
590 592anti-parallel
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