Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8VYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3SER 230
B
 ASN 4TRP 228
C
 SER 363SER 364
C
 ALA 366ALA 728
C
 GLU 730LEU 733
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8VYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
37 69Right-handed alpha
Helix 4
AA4
A
70 72Right-handed 310
Helix 5
AA5
A
73 104Right-handed alpha
Helix 6
AA6
A
111 133Right-handed alpha
Helix 7
AA7
A
135 160Right-handed alpha
Helix 8
AA8
A
164 181Right-handed alpha
Helix 9
AA9
A
184 203Right-handed alpha
Helix 10
AB1
A
210 230Right-handed alpha
Helix 11
AB2
B
5 17Right-handed alpha
Helix 12
AB3
B
18 32Right-handed alpha
Helix 13
AB4
B
37 69Right-handed alpha
Helix 14
AB5
B
73 109Right-handed alpha
Helix 15
AB6
B
111 133Right-handed alpha
Helix 16
AB7
B
135 157Right-handed alpha
Helix 17
AB8
B
164 180Right-handed alpha
Helix 18
AB9
B
184 203Right-handed alpha
Helix 19
AC1
B
211 226Right-handed alpha
Helix 20
AC2
C
495 507Right-handed alpha
Helix 21
AC3
C
554 570Right-handed alpha
Helix 22
AC4
C
634 651Right-handed alpha
Helix 23
AC5
C
686 698Right-handed alpha
Helix 24
AC6
C
706 718Right-handed alpha
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There are 2 sheets in PDB entry 8VYP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
472 474first strand
Strand 2
C
480 482anti-parallel
Strand 3
C
528 530anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
583 585first strand
Strand 2
C
589 591anti-parallel
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