Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8VYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 361SER 364
A
 ALA 366ALA 728
A
 GLU 730ALA 736
B
 ASP 2SER 230
C
 ASP 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8VYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
493 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
634 652Right-handed alpha
Helix 5
AA5
A
677 681Right-handed 310
Helix 6
AA6
A
686 697Right-handed alpha
Helix 7
AA7
A
700 704Right-handed 310
Helix 8
AA8
A
706 718Right-handed alpha
Helix 9
AA9
B
3 16Right-handed alpha
Helix 10
AB1
B
18 32Right-handed alpha
Helix 11
AB2
B
37 66Right-handed alpha
Helix 12
AB3
B
67 69Right-handed 310
Helix 13
AB4
B
76 104Right-handed alpha
Helix 14
AB5
B
113 131Right-handed alpha
Helix 15
AB6
B
132 133Right-handed 310
Helix 16
AB7
B
137 140Right-handed 310
Helix 17
AB8
B
141 157Right-handed alpha
Helix 18
AB9
B
164 183Right-handed alpha
Helix 19
AC1
B
184 201Right-handed alpha
Helix 20
AC2
B
210 229Right-handed alpha
Helix 21
AC3
C
3 17Right-handed alpha
Helix 22
AC4
C
18 33Right-handed alpha
Helix 23
AC5
C
37 70Right-handed alpha
Helix 24
AC6
C
74 105Right-handed alpha
Helix 25
AC7
C
112 133Right-handed alpha
Helix 26
AC8
C
134 160Right-handed alpha
Helix 27
AC9
C
164 181Right-handed alpha
Helix 28
AD1
C
184 203Right-handed alpha
Helix 29
AD2
C
207 228Right-handed alpha
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There are 2 sheets in PDB entry 8VYR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 464first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
589 590anti-parallel
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