Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYV entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8VYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2SER 230
C
 ARG 362SER 364
C
 ILE 823LEU 1083
C
 GLU 1138LEU 1141
B
 MET 1SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8VYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 69Right-handed alpha
Helix 4
AA4
A
72 104Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
113 133Right-handed alpha
Helix 7
AA7
A
136 154Right-handed alpha
Helix 8
AA8
A
164 181Right-handed alpha
Helix 9
AA9
A
184 203Right-handed alpha
Helix 10
AB1
A
207 228Right-handed alpha
Helix 11
AB2
C
860 872Right-handed alpha
Helix 12
AB3
C
902 908Right-handed alpha
Helix 13
AB4
C
918 936Right-handed alpha
Helix 14
AB5
C
952 954Right-handed 310
Helix 15
AB6
C
982 986Right-handed 310
Helix 16
AB7
C
1000 1018Right-handed alpha
Helix 17
AB8
C
1052 1063Right-handed alpha
Helix 18
AB9
C
1072 1083Right-handed alpha
Helix 19
AC1
B
2 16Right-handed alpha
Helix 20
AC2
B
18 34Right-handed alpha
Helix 21
AC3
B
39 70Right-handed alpha
Helix 22
AC4
B
74 76Right-handed 310
Helix 23
AC5
B
77 104Right-handed alpha
Helix 24
AC6
B
111 133Right-handed alpha
Helix 25
AC7
B
134 160Right-handed alpha
Helix 26
AC8
B
165 182Right-handed alpha
Helix 27
AC9
B
184 202Right-handed alpha
Helix 28
AD1
B
203 206Right-handed 310
Helix 29
AD2
B
207 229Right-handed alpha
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There are 2 sheets in PDB entry 8VYV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
824 828first strand
Strand 2
C
837 841anti-parallel
Strand 3
C
845 849anti-parallel
Strand 4
C
892 896anti-parallel
Strand 5
C
882 886anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
949 951first strand
Strand 2
C
955 957anti-parallel
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