Analysis of interatomic Contacts of Structural Units in PDB entry:
8VYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VYY entry

There are 2 chains in PDB entry 8VYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4THR 265
B
 SER 4THR 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8VYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 29Right-handed alpha
Helix 2
AA2
A
29 36Right-handed alpha
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
47 78Right-handed alpha
Helix 5
AA5
A
80 109Right-handed alpha
Helix 6
AA6
A
110 121Right-handed alpha
Helix 7
AA7
A
126 129Right-handed 310
Helix 8
AA8
A
130 154Right-handed alpha
Helix 9
AA9
A
157 164Right-handed alpha
Helix 10
AB1
A
174 210Right-handed alpha
Helix 11
AB2
A
212 216Right-handed 310
Helix 12
AB3
A
236 244Right-handed alpha
Helix 13
AB4
A
249 264Right-handed alpha
Helix 14
AB5
B
22 29Right-handed alpha
Helix 15
AB6
B
29 36Right-handed alpha
Helix 16
AB7
B
47 78Right-handed alpha
Helix 17
AB8
B
80 109Right-handed alpha
Helix 18
AB9
B
110 119Right-handed alpha
Helix 19
AC1
B
126 129Right-handed 310
Helix 20
AC2
B
130 154Right-handed alpha
Helix 21
AC3
B
157 164Right-handed alpha
Helix 22
AC4
B
174 210Right-handed alpha
Helix 23
AC5
B
212 216Right-handed 310
Helix 24
AC6
B
236 244Right-handed alpha
Helix 25
AC7
B
249 264Right-handed alpha
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There are no sheets in PDB entry 8VYY
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il