Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VZ8 entry

There are 4 chains in PDB entry 8VZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PRO 270
B
 ALA -3ASP 95
C
 GLY 3ILE 191
D
 ALA 3ALA 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8VZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
55 84Right-handed alpha
Helix 3
AA3
A
102 104Right-handed 310
Helix 4
AA4
A
133 144Right-handed alpha
Helix 5
AA5
A
146 159Right-handed alpha
Helix 6
AA6
A
160 172Right-handed alpha
Helix 7
AA7
A
172 177Right-handed alpha
Helix 8
AA8
D
116 120Right-handed 310
Helix 9
AA9
D
131 139Right-handed alpha
Helix 10
AB1
D
197 202Right-handed alpha
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There are 15 sheets in PDB entry 8VZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
91 100anti-parallel
Strand 6
A
106 114anti-parallel
Strand 7
A
117 123anti-parallel
Strand 8
A
128 131anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 189first strand
Strand 2
A
197 205anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
227 232anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
258 259anti-parallel
Strand 3
A
264 265anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
220 221anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
18 27anti-parallel
Strand 3
B
59 67anti-parallel
Strand 4
B
52 53anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
75 81anti-parallel
Strand 4
B
88 91anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
15 24anti-parallel
Strand 3
C
70 78anti-parallel
Strand 4
C
62 65anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
103 108parallel
Strand 3
C
84 91anti-parallel
Strand 4
C
32 37anti-parallel
Strand 5
C
44 49anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
103 108parallel
Strand 3
C
84 91anti-parallel
Strand 4
C
97 99anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 120first strand
Strand 2
C
132 135anti-parallel
Strand 3
C
169 173anti-parallel
Strand 4
C
157 158anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
75 78anti-parallel
Strand 4
D
65 67anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
31 37anti-parallel
Strand 5
D
44 49anti-parallel
Strand 6
D
55 57anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
103 105anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 128first strand
Strand 2
D
140 150anti-parallel
Strand 3
D
187 196anti-parallel
Strand 4
D
177 178anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
155 159first strand
Strand 2
D
206 213anti-parallel
Strand 3
D
232 239anti-parallel
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