Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VZ9 entry

There are 4 chains in PDB entry 8VZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	PRO 270
B	ALA -3	ASP 95
C	GLY 3	ILE 191
D	ALA 3	ARG 243

There are 11 helices in PDB entry 8VZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	52	Right-handed alpha
Helix 2	AA2	A	57	84	Right-handed alpha
Helix 3	AA3	A	133	144	Right-handed alpha
Helix 4	AA4	A	146	159	Right-handed alpha
Helix 5	AA5	A	159	171	Right-handed alpha
Helix 6	AA6	A	172	177	Right-handed alpha
Helix 7	AA7	C	79	83	Right-handed 310
Helix 8	AA8	D	82	86	Right-handed 310
Helix 9	AA9	D	118	122	Right-handed 310
Helix 10	AB1	D	133	140	Right-handed alpha
Helix 11	AB2	D	198	204	Right-handed alpha

There are 15 sheets in PDB entry 8VZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	2	12	anti-parallel
Strand 5	A	91	101	anti-parallel
Strand 6	A	106	114	anti-parallel
Strand 7	A	117	123	anti-parallel
Strand 8	A	128	131	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	197	205	anti-parallel
Strand 3	A	238	245	anti-parallel
Strand 4	A	225	232	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	254	260	anti-parallel
Strand 3	A	263	267	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	18	27	anti-parallel
Strand 3	B	59	67	anti-parallel
Strand 4	B	47	48	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	18	27	anti-parallel
Strand 3	B	59	67	anti-parallel
Strand 4	B	52	53	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	75	81	anti-parallel
Strand 4	B	88	91	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	60	65	anti-parallel
Strand 5	C	53	56	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	103	108	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	32	37	anti-parallel
Strand 5	C	44	49	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	103	108	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	97	99	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	122	first strand
Strand 2	C	130	135	anti-parallel
Strand 3	C	172	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	166	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	75	78	anti-parallel
Strand 4	D	65	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	111	116	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	44	49	anti-parallel
Strand 6	D	56	57	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	130	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	191	195	anti-parallel
Strand 4	D	172	174	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	167	first strand
Strand 2	D	157	163	anti-parallel
Strand 3	D	208	215	anti-parallel
Strand 4	D	234	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZ9