Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VZB entry

There are 3 chains in PDB entry 8VZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR -5	GLY 554
B	TYR -5	GLY 554
C	TYR -5	VAL 212

There are111 helices in PDB entry 8VZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	34	44	Right-handed alpha
Helix 3	AA3	A	53	69	Right-handed alpha
Helix 4	AA4	A	79	96	Right-handed alpha
Helix 5	AA5	A	107	111	Right-handed 310
Helix 6	AA6	A	120	126	Right-handed alpha
Helix 7	AA7	A	127	129	Right-handed 310
Helix 8	AA8	A	137	139	Right-handed 310
Helix 9	AA9	A	140	154	Right-handed alpha
Helix 10	AB1	A	166	170	Right-handed alpha
Helix 11	AB2	A	176	178	Right-handed 310
Helix 12	AB3	A	193	207	Right-handed alpha
Helix 13	AB4	A	215	221	Right-handed alpha
Helix 14	AB5	A	223	235	Right-handed alpha
Helix 15	AB6	A	256	258	Right-handed 310
Helix 16	AB7	A	259	267	Right-handed alpha
Helix 17	AB8	A	278	285	Right-handed 310
Helix 18	AB9	A	301	305	Right-handed 310
Helix 19	AC1	A	318	331	Right-handed alpha
Helix 20	AC2	A	341	364	Right-handed alpha
Helix 21	AC3	A	370	380	Right-handed alpha
Helix 22	AC4	A	393	403	Right-handed alpha
Helix 23	AC5	A	414	418	Right-handed 310
Helix 24	AC6	A	422	434	Right-handed alpha
Helix 25	AC7	A	445	452	Right-handed alpha
Helix 26	AC8	A	454	461	Right-handed alpha
Helix 27	AC9	A	500	506	Right-handed alpha
Helix 28	AD1	A	515	529	Right-handed alpha
Helix 29	AD2	B	10	21	Right-handed alpha
Helix 30	AD3	B	34	44	Right-handed alpha
Helix 31	AD4	B	53	69	Right-handed alpha
Helix 32	AD5	B	79	96	Right-handed alpha
Helix 33	AD6	B	107	111	Right-handed 310
Helix 34	AD7	B	120	126	Right-handed alpha
Helix 35	AD8	B	127	129	Right-handed 310
Helix 36	AD9	B	137	139	Right-handed 310
Helix 37	AE1	B	140	154	Right-handed alpha
Helix 38	AE2	B	166	170	Right-handed alpha
Helix 39	AE3	B	176	178	Right-handed 310
Helix 40	AE4	B	193	207	Right-handed alpha
Helix 41	AE5	B	215	221	Right-handed alpha
Helix 42	AE6	B	223	235	Right-handed alpha
Helix 43	AE7	B	256	258	Right-handed 310
Helix 44	AE8	B	259	267	Right-handed alpha
Helix 45	AE9	B	278	285	Right-handed 310
Helix 46	AF1	B	301	305	Right-handed 310
Helix 47	AF2	B	318	334	Right-handed alpha
Helix 48	AF3	B	341	364	Right-handed alpha
Helix 49	AF4	B	370	380	Right-handed alpha
Helix 50	AF5	B	393	403	Right-handed alpha
Helix 51	AF6	B	414	418	Right-handed 310
Helix 52	AF7	B	422	434	Right-handed alpha
Helix 53	AF8	B	445	452	Right-handed alpha
Helix 54	AF9	B	454	461	Right-handed alpha
Helix 55	AG1	B	500	506	Right-handed alpha
Helix 56	AG2	B	515	529	Right-handed alpha
Helix 57	AG3	C	10	21	Right-handed alpha
Helix 58	AG4	C	34	44	Right-handed alpha
Helix 59	AG5	C	53	69	Right-handed alpha
Helix 60	AG6	C	79	96	Right-handed alpha
Helix 61	AG7	C	107	111	Right-handed 310
Helix 62	AG8	C	120	126	Right-handed alpha
Helix 63	AG9	C	127	129	Right-handed 310
Helix 64	AH1	C	137	139	Right-handed 310
Helix 65	AH2	C	140	154	Right-handed alpha
Helix 66	AH3	C	166	171	Right-handed alpha
Helix 67	AH4	C	176	178	Right-handed 310
Helix 68	AH5	C	193	207	Right-handed alpha
Helix 69	AH6	C	215	221	Right-handed alpha
Helix 70	AH7	C	223	235	Right-handed alpha
Helix 71	AH8	C	256	258	Right-handed 310
Helix 72	AH9	C	259	267	Right-handed alpha
Helix 73	AI1	C	278	285	Right-handed 310
Helix 74	AI2	C	301	305	Right-handed 310
Helix 75	AI3	C	318	332	Right-handed alpha
Helix 76	AI4	C	341	364	Right-handed alpha
Helix 77	AI5	C	370	381	Right-handed alpha
Helix 78	AI6	C	393	403	Right-handed alpha
Helix 79	AI7	C	414	418	Right-handed 310
Helix 80	AI8	C	422	434	Right-handed alpha
Helix 81	AI9	C	445	452	Right-handed alpha
Helix 82	AJ1	C	454	461	Right-handed alpha
Helix 83	AJ2	C	500	506	Right-handed alpha
Helix 84	AJ3	C	515	529	Right-handed alpha
Helix 85	AJ4	D	10	21	Right-handed alpha
Helix 86	AJ5	D	34	44	Right-handed alpha
Helix 87	AJ6	D	53	69	Right-handed alpha
Helix 88	AJ7	D	79	96	Right-handed alpha
Helix 89	AJ8	D	107	111	Right-handed 310
Helix 90	AJ9	D	120	126	Right-handed alpha
Helix 91	AK1	D	127	129	Right-handed 310
Helix 92	AK2	D	137	139	Right-handed 310
Helix 93	AK3	D	140	154	Right-handed alpha
Helix 94	AK4	D	166	170	Right-handed alpha
Helix 95	AK5	D	193	207	Right-handed alpha
Helix 96	AK6	D	215	222	Right-handed alpha
Helix 97	AK7	D	223	235	Right-handed alpha
Helix 98	AK8	D	256	258	Right-handed 310
Helix 99	AK9	D	259	267	Right-handed alpha
Helix 100	AL1	D	278	285	Right-handed 310
Helix 101	AL2	D	301	305	Right-handed 310
Helix 102	AL3	D	318	331	Right-handed alpha
Helix 103	AL4	D	341	364	Right-handed alpha
Helix 104	AL5	D	370	380	Right-handed alpha
Helix 105	AL6	D	393	403	Right-handed alpha
Helix 106	AL7	D	414	418	Right-handed 310
Helix 107	AL8	D	422	434	Right-handed alpha
Helix 108	AL9	D	445	452	Right-handed alpha
Helix 109	AM1	D	454	461	Right-handed alpha
Helix 110	AM2	D	500	506	Right-handed alpha
Helix 111	AM3	D	515	529	Right-handed alpha

There are 16 sheets in PDB entry 8VZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	172	174	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	25	28	parallel
Strand 3	A	73	76	parallel
Strand 4	A	99	105	parallel
Strand 5	A	159	165	parallel
Strand 6	A	131	134	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	210	214	parallel
Strand 3	A	269	273	parallel
Strand 4	A	294	299	parallel
Strand 5	A	313	316	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	387	391	parallel
Strand 3	A	439	444	parallel
Strand 4	A	466	471	parallel
Strand 5	A	533	538	parallel
Strand 6	A	509	513	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	9	first strand
Strand 2	B	172	174	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	25	28	parallel
Strand 3	B	73	76	parallel
Strand 4	B	99	105	parallel
Strand 5	B	159	165	parallel
Strand 6	B	131	134	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	210	214	parallel
Strand 3	B	269	273	parallel
Strand 4	B	294	299	parallel
Strand 5	B	313	316	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	387	391	parallel
Strand 3	B	439	444	parallel
Strand 4	B	466	471	parallel
Strand 5	B	533	538	parallel
Strand 6	B	509	513	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	9	first strand
Strand 2	C	172	174	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	25	28	parallel
Strand 3	C	73	76	parallel
Strand 4	C	99	105	parallel
Strand 5	C	159	165	parallel
Strand 6	C	131	134	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	210	214	parallel
Strand 3	C	269	273	parallel
Strand 4	C	294	299	parallel
Strand 5	C	313	316	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	C	387	391	parallel
Strand 3	C	439	444	parallel
Strand 4	C	466	471	parallel
Strand 5	C	533	538	parallel
Strand 6	C	509	513	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	172	174	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	25	28	parallel
Strand 3	D	73	76	parallel
Strand 4	D	99	105	parallel
Strand 5	D	159	165	parallel
Strand 6	D	131	134	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	240	first strand
Strand 2	D	210	214	parallel
Strand 3	D	269	273	parallel
Strand 4	D	294	299	parallel
Strand 5	D	313	316	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	412	first strand
Strand 2	D	387	391	parallel
Strand 3	D	439	444	parallel
Strand 4	D	466	471	parallel
Strand 5	D	533	538	parallel
Strand 6	D	509	513	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZB