Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VZD entry

There are 2 chains in PDB entry 8VZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 550
B
 ALA 2THR 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8VZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
30 40Right-handed alpha
Helix 3
AA3
A
49 65Right-handed alpha
Helix 4
AA4
A
75 81Right-handed alpha
Helix 5
AA5
A
81 92Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
116 122Right-handed alpha
Helix 8
AA8
A
123 125Right-handed 310
Helix 9
AA9
A
136 150Right-handed alpha
Helix 10
AB1
A
162 167Right-handed alpha
Helix 11
AB2
A
172 174Right-handed 310
Helix 12
AB3
A
189 201Right-handed alpha
Helix 13
AB4
A
211 217Right-handed alpha
Helix 14
AB5
A
219 231Right-handed alpha
Helix 15
AB6
A
252 254Right-handed 310
Helix 16
AB7
A
255 263Right-handed alpha
Helix 17
AB8
A
277 281Right-handed 310
Helix 18
AB9
A
297 301Right-handed 310
Helix 19
AC1
A
314 329Right-handed alpha
Helix 20
AC2
A
337 359Right-handed alpha
Helix 21
AC3
A
366 378Right-handed alpha
Helix 22
AC4
A
389 399Right-handed alpha
Helix 23
AC5
A
418 430Right-handed alpha
Helix 24
AC6
A
441 447Right-handed alpha
Helix 25
AC7
A
450 457Right-handed alpha
Helix 26
AC8
A
493 501Right-handed 310
Helix 27
AC9
A
510 512Right-handed 310
Helix 28
AD1
A
513 523Right-handed alpha
Helix 29
AD2
B
6 17Right-handed alpha
Helix 30
AD3
B
30 40Right-handed alpha
Helix 31
AD4
B
49 65Right-handed alpha
Helix 32
AD5
B
75 81Right-handed alpha
Helix 33
AD6
B
81 92Right-handed alpha
Helix 34
AD7
B
103 107Right-handed 310
Helix 35
AD8
B
116 122Right-handed alpha
Helix 36
AD9
B
123 125Right-handed 310
Helix 37
AE1
B
136 150Right-handed alpha
Helix 38
AE2
B
162 167Right-handed alpha
Helix 39
AE3
B
172 174Right-handed 310
Helix 40
AE4
B
189 203Right-handed alpha
Helix 41
AE5
B
211 217Right-handed alpha
Helix 42
AE6
B
219 231Right-handed alpha
Helix 43
AE7
B
252 254Right-handed 310
Helix 44
AE8
B
255 263Right-handed alpha
Helix 45
AE9
B
274 281Right-handed 310
Helix 46
AF1
B
314 329Right-handed alpha
Helix 47
AF2
B
337 359Right-handed alpha
Helix 48
AF3
B
366 376Right-handed alpha
Helix 49
AF4
B
389 399Right-handed alpha
Helix 50
AF5
B
418 430Right-handed alpha
Helix 51
AF6
B
441 446Right-handed alpha
Helix 52
AF7
B
449 457Right-handed alpha
Helix 53
AF8
B
493 501Right-handed 310
Helix 54
AF9
B
510 512Right-handed 310
Helix 55
AG1
B
513 523Right-handed alpha
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There are 8 sheets in PDB entry 8VZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
168 170anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
21 24parallel
Strand 3
A
68 72parallel
Strand 4
A
95 101parallel
Strand 5
A
155 161parallel
Strand 6
A
127 129parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
206 210parallel
Strand 3
A
265 269parallel
Strand 4
A
290 295parallel
Strand 5
A
309 312parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
383 387parallel
Strand 3
A
435 440parallel
Strand 4
A
461 467parallel
Strand 5
A
529 533parallel
Strand 6
A
505 508parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
168 170anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
21 24parallel
Strand 3
B
68 72parallel
Strand 4
B
95 101parallel
Strand 5
B
155 161parallel
Strand 6
B
127 129parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 236first strand
Strand 2
B
206 210parallel
Strand 3
B
265 269parallel
Strand 4
B
290 295parallel
Strand 5
B
309 312parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 408first strand
Strand 2
B
383 387parallel
Strand 3
B
435 440parallel
Strand 4
B
461 467parallel
Strand 5
B
529 533parallel
Strand 6
B
505 508parallel
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