Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VZH entry

There are 3 chains in PDB entry 8VZH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 539
B
 MET 1GLY 539
C
 MET 1ASP 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 8VZH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 17Right-handed alpha
Helix 2
AA2
A
30 40Right-handed alpha
Helix 3
AA3
A
49 65Right-handed alpha
Helix 4
AA4
A
75 81Right-handed alpha
Helix 5
AA5
A
81 92Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
116 122Right-handed alpha
Helix 8
AA8
A
136 150Right-handed alpha
Helix 9
AA9
A
162 167Right-handed alpha
Helix 10
AB1
A
172 174Right-handed 310
Helix 11
AB2
A
189 202Right-handed alpha
Helix 12
AB3
A
211 217Right-handed alpha
Helix 13
AB4
A
219 231Right-handed alpha
Helix 14
AB5
A
252 254Right-handed 310
Helix 15
AB6
A
255 263Right-handed alpha
Helix 16
AB7
A
274 281Right-handed 310
Helix 17
AB8
A
297 301Right-handed 310
Helix 18
AB9
A
314 329Right-handed alpha
Helix 19
AC1
A
337 359Right-handed alpha
Helix 20
AC2
A
366 378Right-handed alpha
Helix 21
AC3
A
389 399Right-handed alpha
Helix 22
AC4
A
418 430Right-handed alpha
Helix 23
AC5
A
441 447Right-handed alpha
Helix 24
AC6
A
449 457Right-handed alpha
Helix 25
AC7
A
493 501Right-handed 310
Helix 26
AC8
A
510 523Right-handed alpha
Helix 27
AC9
B
6 17Right-handed alpha
Helix 28
AD1
B
30 40Right-handed alpha
Helix 29
AD2
B
49 65Right-handed alpha
Helix 30
AD3
B
75 92Right-handed alpha
Helix 31
AD4
B
103 107Right-handed 310
Helix 32
AD5
B
116 122Right-handed alpha
Helix 33
AD6
B
136 150Right-handed alpha
Helix 34
AD7
B
162 167Right-handed alpha
Helix 35
AD8
B
172 174Right-handed 310
Helix 36
AD9
B
189 203Right-handed alpha
Helix 37
AE1
B
211 217Right-handed alpha
Helix 38
AE2
B
219 231Right-handed alpha
Helix 39
AE3
B
252 254Right-handed 310
Helix 40
AE4
B
255 263Right-handed alpha
Helix 41
AE5
B
274 281Right-handed 310
Helix 42
AE6
B
297 301Right-handed 310
Helix 43
AE7
B
314 329Right-handed alpha
Helix 44
AE8
B
337 359Right-handed alpha
Helix 45
AE9
B
366 376Right-handed alpha
Helix 46
AF1
B
389 399Right-handed alpha
Helix 47
AF2
B
418 430Right-handed alpha
Helix 48
AF3
B
441 447Right-handed alpha
Helix 49
AF4
B
449 457Right-handed alpha
Helix 50
AF5
B
493 501Right-handed 310
Helix 51
AF6
B
510 512Right-handed 310
Helix 52
AF7
B
513 523Right-handed alpha
Helix 53
AF8
C
6 17Right-handed alpha
Helix 54
AF9
C
30 41Right-handed alpha
Helix 55
AG1
C
49 65Right-handed alpha
Helix 56
AG2
C
75 92Right-handed alpha
Helix 57
AG3
C
103 107Right-handed 310
Helix 58
AG4
C
116 122Right-handed alpha
Helix 59
AG5
C
136 150Right-handed alpha
Helix 60
AG6
C
162 167Right-handed alpha
Helix 61
AG7
C
172 174Right-handed 310
Helix 62
AG8
C
189 203Right-handed alpha
Helix 63
AG9
C
211 217Right-handed alpha
Helix 64
AH1
C
219 231Right-handed alpha
Helix 65
AH2
C
252 254Right-handed 310
Helix 66
AH3
C
255 263Right-handed alpha
Helix 67
AH4
C
274 281Right-handed 310
Helix 68
AH5
C
297 301Right-handed 310
Helix 69
AH6
C
314 329Right-handed alpha
Helix 70
AH7
C
337 360Right-handed alpha
Helix 71
AH8
C
366 376Right-handed alpha
Helix 72
AH9
C
389 399Right-handed alpha
Helix 73
AI1
C
418 430Right-handed alpha
Helix 74
AI2
C
441 447Right-handed alpha
Helix 75
AI3
C
449 457Right-handed alpha
Helix 76
AI4
C
493 501Right-handed 310
Helix 77
AI5
C
510 523Right-handed alpha
Helix 78
AI6
D
6 17Right-handed alpha
Helix 79
AI7
D
30 40Right-handed alpha
Helix 80
AI8
D
49 65Right-handed alpha
Helix 81
AI9
D
75 92Right-handed alpha
Helix 82
AJ1
D
103 107Right-handed 310
Helix 83
AJ2
D
116 122Right-handed alpha
Helix 84
AJ3
D
136 150Right-handed alpha
Helix 85
AJ4
D
162 167Right-handed alpha
Helix 86
AJ5
D
172 174Right-handed 310
Helix 87
AJ6
D
189 202Right-handed alpha
Helix 88
AJ7
D
211 217Right-handed alpha
Helix 89
AJ8
D
219 231Right-handed alpha
Helix 90
AJ9
D
252 254Right-handed 310
Helix 91
AK1
D
255 263Right-handed alpha
Helix 92
AK2
D
274 281Right-handed 310
Helix 93
AK3
D
297 301Right-handed 310
Helix 94
AK4
D
314 329Right-handed alpha
Helix 95
AK5
D
337 359Right-handed alpha
Helix 96
AK6
D
366 376Right-handed alpha
Helix 97
AK7
D
389 399Right-handed alpha
Helix 98
AK8
D
418 430Right-handed alpha
Helix 99
AK9
D
441 448Right-handed alpha
Helix 100
AL1
D
450 457Right-handed alpha
Helix 101
AL2
D
493 501Right-handed 310
Helix 102
AL3
D
510 523Right-handed alpha
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There are 16 sheets in PDB entry 8VZH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
168 170anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
21 24parallel
Strand 3
A
68 72parallel
Strand 4
A
95 101parallel
Strand 5
A
155 161parallel
Strand 6
A
125 129parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
206 210parallel
Strand 3
A
265 269parallel
Strand 4
A
290 295parallel
Strand 5
A
309 312parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
383 387parallel
Strand 3
A
435 440parallel
Strand 4
A
461 467parallel
Strand 5
A
529 533parallel
Strand 6
A
505 508parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
168 170anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
21 24parallel
Strand 3
B
68 72parallel
Strand 4
B
95 101parallel
Strand 5
B
155 161parallel
Strand 6
B
125 129parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 236first strand
Strand 2
B
206 210parallel
Strand 3
B
265 269parallel
Strand 4
B
290 295parallel
Strand 5
B
309 312parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 408first strand
Strand 2
B
383 387parallel
Strand 3
B
435 440parallel
Strand 4
B
461 467parallel
Strand 5
B
529 533parallel
Strand 6
B
505 508parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
168 170anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 46first strand
Strand 2
C
21 24parallel
Strand 3
C
68 72parallel
Strand 4
C
95 101parallel
Strand 5
C
155 161parallel
Strand 6
C
125 129parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 236first strand
Strand 2
C
206 210parallel
Strand 3
C
265 269parallel
Strand 4
C
290 295parallel
Strand 5
C
309 312parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
407 408first strand
Strand 2
C
383 387parallel
Strand 3
C
435 440parallel
Strand 4
C
461 467parallel
Strand 5
C
529 533parallel
Strand 6
C
505 508parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
168 170anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 46first strand
Strand 2
D
21 24parallel
Strand 3
D
68 72parallel
Strand 4
D
95 101parallel
Strand 5
D
155 161parallel
Strand 6
D
125 129parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
234 236first strand
Strand 2
D
206 210parallel
Strand 3
D
265 269parallel
Strand 4
D
290 295parallel
Strand 5
D
309 312parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
407 408first strand
Strand 2
D
383 387parallel
Strand 3
D
435 440parallel
Strand 4
D
461 467parallel
Strand 5
D
529 533parallel
Strand 6
D
505 508parallel
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