Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8VZI entry

There are 3 chains in PDB entry 8VZI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	PRO 543
B	LEU 6	PRO 543
C	GLN 5	VAL 210

There are115 helices in PDB entry 8VZI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	19	Right-handed alpha
Helix 2	AA2	A	32	42	Right-handed alpha
Helix 3	AA3	A	51	67	Right-handed alpha
Helix 4	AA4	A	77	94	Right-handed alpha
Helix 5	AA5	A	105	109	Right-handed 310
Helix 6	AA6	A	118	125	Right-handed alpha
Helix 7	AA7	A	135	137	Right-handed 310
Helix 8	AA8	A	138	152	Right-handed alpha
Helix 9	AA9	A	164	168	Right-handed alpha
Helix 10	AB1	A	189	202	Right-handed alpha
Helix 11	AB2	A	211	217	Right-handed alpha
Helix 12	AB3	A	219	231	Right-handed alpha
Helix 13	AB4	A	238	241	Right-handed 310
Helix 14	AB5	A	252	254	Right-handed 310
Helix 15	AB6	A	255	263	Right-handed alpha
Helix 16	AB7	A	274	281	Right-handed 310
Helix 17	AB8	A	295	299	Right-handed 310
Helix 18	AB9	A	312	327	Right-handed alpha
Helix 19	AC1	A	333	340	Right-handed alpha
Helix 20	AC2	A	340	356	Right-handed alpha
Helix 21	AC3	A	364	381	Right-handed alpha
Helix 22	AC4	A	391	401	Right-handed alpha
Helix 23	AC5	A	420	432	Right-handed alpha
Helix 24	AC6	A	443	450	Right-handed alpha
Helix 25	AC7	A	452	459	Right-handed alpha
Helix 26	AC8	A	484	488	Right-handed 310
Helix 27	AC9	A	498	507	Right-handed 310
Helix 28	AD1	A	515	527	Right-handed alpha
Helix 29	AD2	B	7	19	Right-handed alpha
Helix 30	AD3	B	32	42	Right-handed alpha
Helix 31	AD4	B	51	67	Right-handed alpha
Helix 32	AD5	B	77	94	Right-handed alpha
Helix 33	AD6	B	105	109	Right-handed 310
Helix 34	AD7	B	118	125	Right-handed alpha
Helix 35	AD8	B	135	137	Right-handed 310
Helix 36	AD9	B	138	152	Right-handed alpha
Helix 37	AE1	B	164	168	Right-handed alpha
Helix 38	AE2	B	189	202	Right-handed alpha
Helix 39	AE3	B	211	217	Right-handed alpha
Helix 40	AE4	B	219	231	Right-handed alpha
Helix 41	AE5	B	238	241	Right-handed 310
Helix 42	AE6	B	252	254	Right-handed 310
Helix 43	AE7	B	255	263	Right-handed alpha
Helix 44	AE8	B	274	281	Right-handed 310
Helix 45	AE9	B	295	299	Right-handed 310
Helix 46	AF1	B	312	327	Right-handed alpha
Helix 47	AF2	B	333	340	Right-handed alpha
Helix 48	AF3	B	340	356	Right-handed alpha
Helix 49	AF4	B	364	381	Right-handed alpha
Helix 50	AF5	B	391	401	Right-handed alpha
Helix 51	AF6	B	420	432	Right-handed alpha
Helix 52	AF7	B	443	450	Right-handed alpha
Helix 53	AF8	B	452	459	Right-handed alpha
Helix 54	AF9	B	484	488	Right-handed 310
Helix 55	AG1	B	498	503	Right-handed alpha
Helix 56	AG2	B	504	507	Right-handed 310
Helix 57	AG3	B	515	525	Right-handed alpha
Helix 58	AG4	C	8	19	Right-handed alpha
Helix 59	AG5	C	32	42	Right-handed alpha
Helix 60	AG6	C	51	67	Right-handed alpha
Helix 61	AG7	C	77	94	Right-handed alpha
Helix 62	AG8	C	105	109	Right-handed 310
Helix 63	AG9	C	118	125	Right-handed alpha
Helix 64	AH1	C	135	137	Right-handed 310
Helix 65	AH2	C	138	152	Right-handed alpha
Helix 66	AH3	C	164	168	Right-handed alpha
Helix 67	AH4	C	189	202	Right-handed alpha
Helix 68	AH5	C	211	217	Right-handed alpha
Helix 69	AH6	C	219	231	Right-handed alpha
Helix 70	AH7	C	238	241	Right-handed 310
Helix 71	AH8	C	252	254	Right-handed 310
Helix 72	AH9	C	255	263	Right-handed alpha
Helix 73	AI1	C	274	281	Right-handed 310
Helix 74	AI2	C	295	299	Right-handed 310
Helix 75	AI3	C	312	328	Right-handed alpha
Helix 76	AI4	C	333	340	Right-handed alpha
Helix 77	AI5	C	340	356	Right-handed alpha
Helix 78	AI6	C	364	381	Right-handed alpha
Helix 79	AI7	C	391	401	Right-handed alpha
Helix 80	AI8	C	420	432	Right-handed alpha
Helix 81	AI9	C	443	447	Right-handed alpha
Helix 82	AJ1	C	448	451	Right-handed 310
Helix 83	AJ2	C	452	459	Right-handed alpha
Helix 84	AJ3	C	484	488	Right-handed 310
Helix 85	AJ4	C	498	503	Right-handed alpha
Helix 86	AJ5	C	504	507	Right-handed 310
Helix 87	AJ6	C	515	525	Right-handed alpha
Helix 88	AJ7	D	8	19	Right-handed alpha
Helix 89	AJ8	D	32	42	Right-handed alpha
Helix 90	AJ9	D	51	67	Right-handed alpha
Helix 91	AK1	D	77	94	Right-handed alpha
Helix 92	AK2	D	105	109	Right-handed 310
Helix 93	AK3	D	118	125	Right-handed alpha
Helix 94	AK4	D	135	137	Right-handed 310
Helix 95	AK5	D	138	152	Right-handed alpha
Helix 96	AK6	D	164	169	Right-handed alpha
Helix 97	AK7	D	189	202	Right-handed alpha
Helix 98	AK8	D	211	217	Right-handed alpha
Helix 99	AK9	D	219	231	Right-handed alpha
Helix 100	AL1	D	238	241	Right-handed 310
Helix 101	AL2	D	252	254	Right-handed 310
Helix 102	AL3	D	255	263	Right-handed alpha
Helix 103	AL4	D	274	281	Right-handed 310
Helix 104	AL5	D	295	299	Right-handed 310
Helix 105	AL6	D	312	327	Right-handed alpha
Helix 106	AL7	D	333	340	Right-handed alpha
Helix 107	AL8	D	340	356	Right-handed alpha
Helix 108	AL9	D	364	381	Right-handed alpha
Helix 109	AM1	D	391	401	Right-handed alpha
Helix 110	AM2	D	420	432	Right-handed alpha
Helix 111	AM3	D	443	450	Right-handed alpha
Helix 112	AM4	D	451	459	Right-handed alpha
Helix 113	AM5	D	484	488	Right-handed 310
Helix 114	AM6	D	498	507	Right-handed 310
Helix 115	AM7	D	515	525	Right-handed alpha

There are 16 sheets in PDB entry 8VZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	23	26	parallel
Strand 3	A	70	74	parallel
Strand 4	A	97	103	parallel
Strand 5	A	157	163	parallel
Strand 6	A	129	132	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	D	186	188	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	206	210	parallel
Strand 3	A	265	269	parallel
Strand 4	A	288	293	parallel
Strand 5	A	307	310	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	385	389	parallel
Strand 3	A	437	442	parallel
Strand 4	A	464	469	parallel
Strand 5	A	533	538	parallel
Strand 6	A	509	513	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	23	26	parallel
Strand 3	B	70	74	parallel
Strand 4	B	97	103	parallel
Strand 5	B	157	163	parallel
Strand 6	B	129	132	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	188	first strand
Strand 2	C	186	188	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	206	210	parallel
Strand 3	B	265	269	parallel
Strand 4	B	288	293	parallel
Strand 5	B	307	310	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	385	389	parallel
Strand 3	B	437	442	parallel
Strand 4	B	464	469	parallel
Strand 5	B	533	538	parallel
Strand 6	B	509	513	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	170	171	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	23	26	parallel
Strand 3	C	70	74	parallel
Strand 4	C	97	103	parallel
Strand 5	C	157	163	parallel
Strand 6	C	129	132	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	236	first strand
Strand 2	C	206	210	parallel
Strand 3	C	265	269	parallel
Strand 4	C	288	293	parallel
Strand 5	C	307	310	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	410	first strand
Strand 2	C	385	389	parallel
Strand 3	C	437	442	parallel
Strand 4	C	464	469	parallel
Strand 5	C	533	538	parallel
Strand 6	C	509	513	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	170	171	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	23	26	parallel
Strand 3	D	70	74	parallel
Strand 4	D	97	103	parallel
Strand 5	D	157	163	parallel
Strand 6	D	129	132	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	236	first strand
Strand 2	D	206	210	parallel
Strand 3	D	265	269	parallel
Strand 4	D	288	293	parallel
Strand 5	D	307	310	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	409	410	first strand
Strand 2	D	385	389	parallel
Strand 3	D	437	442	parallel
Strand 4	D	464	469	parallel
Strand 5	D	533	538	parallel
Strand 6	D	509	513	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8VZI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZI