Analysis of interatomic Contacts of Structural Units in PDB entry:
8VZK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8VZK entry

There are 2 chains in PDB entry 8VZK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8PRO 550
B
 ALA 9PRO 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8VZK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
56 72Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
88 98Right-handed alpha
Helix 6
AA6
A
110 114Right-handed 310
Helix 7
AA7
A
124 129Right-handed alpha
Helix 8
AA8
A
130 132Right-handed 310
Helix 9
AA9
A
140 142Right-handed 310
Helix 10
AB1
A
143 157Right-handed alpha
Helix 11
AB2
A
169 174Right-handed alpha
Helix 12
AB3
A
179 181Right-handed 310
Helix 13
AB4
A
196 209Right-handed alpha
Helix 14
AB5
A
218 224Right-handed alpha
Helix 15
AB6
A
226 238Right-handed alpha
Helix 16
AB7
A
245 248Right-handed 310
Helix 17
AB8
A
259 261Right-handed 310
Helix 18
AB9
A
262 270Right-handed alpha
Helix 19
AC1
A
284 288Right-handed 310
Helix 20
AC2
A
304 308Right-handed 310
Helix 21
AC3
A
321 337Right-handed alpha
Helix 22
AC4
A
344 366Right-handed alpha
Helix 23
AC5
A
373 385Right-handed alpha
Helix 24
AC6
A
396 406Right-handed alpha
Helix 25
AC7
A
417 421Right-handed 310
Helix 26
AC8
A
425 437Right-handed alpha
Helix 27
AC9
A
448 452Right-handed alpha
Helix 28
AD1
A
453 456Right-handed 310
Helix 29
AD2
A
457 464Right-handed alpha
Helix 30
AD3
A
484 488Right-handed 310
Helix 31
AD4
A
501 510Right-handed alpha
Helix 32
AD5
A
518 532Right-handed alpha
Helix 33
AD6
B
13 24Right-handed alpha
Helix 34
AD7
B
37 47Right-handed alpha
Helix 35
AD8
B
56 72Right-handed alpha
Helix 36
AD9
B
82 87Right-handed alpha
Helix 37
AE1
B
88 98Right-handed alpha
Helix 38
AE2
B
110 114Right-handed 310
Helix 39
AE3
B
124 129Right-handed alpha
Helix 40
AE4
B
130 132Right-handed 310
Helix 41
AE5
B
140 142Right-handed 310
Helix 42
AE6
B
143 157Right-handed alpha
Helix 43
AE7
B
169 174Right-handed alpha
Helix 44
AE8
B
179 181Right-handed 310
Helix 45
AE9
B
196 209Right-handed alpha
Helix 46
AF1
B
218 224Right-handed alpha
Helix 47
AF2
B
226 238Right-handed alpha
Helix 48
AF3
B
245 248Right-handed 310
Helix 49
AF4
B
259 261Right-handed 310
Helix 50
AF5
B
262 270Right-handed alpha
Helix 51
AF6
B
284 288Right-handed 310
Helix 52
AF7
B
304 308Right-handed 310
Helix 53
AF8
B
321 337Right-handed alpha
Helix 54
AF9
B
344 366Right-handed alpha
Helix 55
AG1
B
373 385Right-handed alpha
Helix 56
AG2
B
396 406Right-handed alpha
Helix 57
AG3
B
417 421Right-handed 310
Helix 58
AG4
B
425 437Right-handed alpha
Helix 59
AG5
B
448 452Right-handed alpha
Helix 60
AG6
B
453 456Right-handed 310
Helix 61
AG7
B
457 464Right-handed alpha
Helix 62
AG8
B
482 488Right-handed 310
Helix 63
AG9
B
501 510Right-handed alpha
Helix 64
AH1
B
518 530Right-handed alpha
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There are 8 sheets in PDB entry 8VZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
175 177anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
28 31parallel
Strand 3
A
76 79parallel
Strand 4
A
102 108parallel
Strand 5
A
162 168parallel
Strand 6
A
134 137parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
213 217parallel
Strand 3
A
272 276parallel
Strand 4
A
297 301parallel
Strand 5
A
316 318parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
390 394parallel
Strand 3
A
442 447parallel
Strand 4
A
468 474parallel
Strand 5
A
536 541parallel
Strand 6
A
512 515parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
175 177anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
28 31parallel
Strand 3
B
76 79parallel
Strand 4
B
102 108parallel
Strand 5
B
162 168parallel
Strand 6
B
134 137parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
213 217parallel
Strand 3
B
272 276parallel
Strand 4
B
297 301parallel
Strand 5
B
316 318parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 415first strand
Strand 2
B
390 394parallel
Strand 3
B
442 447parallel
Strand 4
B
468 474parallel
Strand 5
B
536 541parallel
Strand 6
B
512 515parallel
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